Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02877 ATGGACACAACTCAGTGGGCACAGGGGAATATTGGGCTGGTTAAACAAATGGAAGGCTCAAAAGCTCCTATGATAGAGAGAAGAGCTAGGCCACAAAAAGATCAAGCTTTGAACTGTCCAAGAAGGTATTGGACTGAAGGTGGTTCTTTGAGAAATGTGCCTGTAGGTGGTGGTTCAAGGAAAAACAAAAGATCATCACCATCACCTTCAATCTCACAACAACCTCCAACAAAAGATATTATTATTCCTGATCTTTCCACCACACAGAATAATGGCTTTCCTCAATCCGCTTCACAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACCGAATACTGAAGATAACTATAACACCATATCTAAATTCATTGAACTTCCTTACACAACTGATCAAGAAAAAACTCGTAATTCATCGTCATCGCCGCTTTCTGCTATGGAGCTACTCAAAACTGGGATTGCTGCTGCTTCTTCTTCTTCAAGGGGTTTGAATTCTTTTATGCCTATCTCATTATCTGACTCTAGTGCAATGTATAATTCAACTGGTTTTTCTTTGCAAGATTTTAAGCCTGGTCTTAATTTTAGTTTAGAAGGATTTGATAATGGTAATTATGGTGCTTTACAAGGGATGAATCAAGAGAATCCTGGTGGTGGTGGTGGTGGTGCAAGGATGTTGTTTCCTGTTGTGGATGAGTTGAATAATAATAATAATAATAATATTAATAATAATAATAATAATAAGCAGCAACAAGTTCCAAATAGTGGTGAGTTTGAACAACATCAGCAGAATAATAGAAGCCATGGTGATTCAACTGGTTATTGGAATGGTATGTTAGGTGGTGGATCATGGTAA 867 0.3795 MDTTQWAQGNIGLVKQMEGSKAPMIERRARPQKDQALNCPRRYWTEGGSLRNVPVGGGSRKNKRSSPSPSISQQPPTKDIIIPDLSTTQNNGFPQSASQNPKIHQGQDLNLAYPPPNTEDNYNTISKFIELPYTTDQEKTRNSSSSPLSAMELLKTGIAAASSSSRGLNSFMPISLSDSSAMYNSTGFSLQDFKPGLNFSLEGFDNGNYGALQGMNQENPGGGGGGARMLFPVVDELNNNNNNNINNNNNNKQQQVPNSGEFEQHQQNNRSHGDSTGYWNGMLGGGSW 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02877 288 MobiDBLite consensus disorder prediction 240 288 - -
Vifa2g02877 288 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 41 207 IPR045174 GO:0003700|GO:0006355
Vifa2g02877 288 MobiDBLite consensus disorder prediction 21 35 - -
Vifa2g02877 288 MobiDBLite consensus disorder prediction 240 276 - -
Vifa2g02877 288 Coils Coil 234 254 - -
Vifa2g02877 288 MobiDBLite consensus disorder prediction 59 114 - -
Vifa2g02877 288 Pfam Dof domain, zinc finger 39 64 IPR003851 GO:0003677|GO:0006355
Vifa2g02877 288 MobiDBLite consensus disorder prediction 18 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02877 Vifa-Chr2 815906927 815908290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02877 22 288 C2C2-Dof Transcription Factor Family AT3G61850 32.899 4.23e-28 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa2g02877 zf-Dof 7.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02877 - - tpra:123909226 318.546