Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02876 ATGGACACAACTCAGTGGGCACAGGGGAATATTGGGCTGGTTAAACAAATGGAAGGCTCAAAAGCTCCTATGATAGAGAGAAGAGCTAGGCCACAAAAAGATCAAGCTTTGAACTGTCCAAGGTATTGGACTGAAGGTGGTTCTTTGAGAAATGTGCCTGTAGGTGGTGGTTCAAGGAAAAACAAAAGATCATCACCATCACCTTCAATCTCACAACAACCTCCAACAAAAGATATTATTATTCCTGATCTTTCCACCACACAGAATAATGGCTTTCCTCAATCCGCTTCACAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACCGAATACTGAAGATAACTATAACACCATATCTAAATTCATTGAACTTCCTTACACAACTGATCAAGAAAAAACTCGTAATTCATCGTCATCGCCGCTTTCTGCTATGGAGCTACTCAAAACTGGGATTGCTGCTGCTTCTTCTTCTTCAAGGGGTTTGAATTCTTTTATGCCTATCTCATTATCTGACTCTAGTGCAATGTATAATTCAACTGGTTTTTCTTTGCAAGATTTTAAGCCTGGTCTTAATTTTAGTTTAGAAGGATTTGATAATGGTAATTATGGTGCTTTACAAGGGATGAATCAAGAGAATCCTGGTGGTGGTGGTGGTGGTGCAAGGATGTTGTTTCCTGTTGTGGATGAGTTGAATAATAATAATAATAATAATATTAATAATAATAATAATAATAAGCAGCAACAAGTTCCAAATAGTGGTGAGTTTGAACAACATCAGCAGAATAATAGAAGCCATGGTGATTCAACTGGTTATTGGAATGGTATGTTAGGTGGTGGATCATGGTAA 864 0.3796 MDTTQWAQGNIGLVKQMEGSKAPMIERRARPQKDQALNCPRYWTEGGSLRNVPVGGGSRKNKRSSPSPSISQQPPTKDIIIPDLSTTQNNGFPQSASQNPKIHQGQDLNLAYPPPNTEDNYNTISKFIELPYTTDQEKTRNSSSSPLSAMELLKTGIAAASSSSRGLNSFMPISLSDSSAMYNSTGFSLQDFKPGLNFSLEGFDNGNYGALQGMNQENPGGGGGGARMLFPVVDELNNNNNNNINNNNNNKQQQVPNSGEFEQHQQNNRSHGDSTGYWNGMLGGGSW 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02876 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 38 207 IPR045174 GO:0003700|GO:0006355
Vifa2g02876 287 MobiDBLite consensus disorder prediction 237 287 - -
Vifa2g02876 287 MobiDBLite consensus disorder prediction 237 275 - -
Vifa2g02876 287 MobiDBLite consensus disorder prediction 18 111 - -
Vifa2g02876 287 Pfam Dof domain, zinc finger 38 63 IPR003851 GO:0003677|GO:0006355
Vifa2g02876 287 MobiDBLite consensus disorder prediction 58 111 - -
Vifa2g02876 287 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02876 Vifa-Chr2 815906927 815908290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02876 22 287 C2C2-Dof Transcription Factor Family AT3G61850 32.573 4.93e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa2g02876 zf-Dof 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02876 - - tpra:123909226 316.235