Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02873 ATGGGTAGTTTCAGTGGAGATGAGGATTGTCAGTTTCTTGATGCTCAAGAGGATGTTTTGTCAATTGGGTATGCAAATTCTGATGATGATAATGATAAAAGTTTGTCTGTTGATTTTGATTATGATGTGTGGATTCGGAGTCCGAAGAGTGTGAGAGAGCGAAGAGGGGAGTTTATGAAGAGTATGGGAATGAGTTTAGATGGAATCGTTGTTGAAAATTCATTAGATGTTGAGAAGGAAGAGATGGTAGATAGAGTAAGAGGAAGTAGTGGTTCTGAAGAGGAATTTAGTTCGAGTCGGTTGTTAATGTCTTGTTGCTCTAGTGTGAGTTTTTCAGAGGAGTTTGGTTTAGTGGATAGTAATAACTTACCGTGTCAAGATGAAAGTTTGGAGAAAGGAGTAGCAACTAATGTCGATAAAAAGGAGGAACAGAAGAAGCATGTGATGGTGAATGATGATTCGGATCATTTGGTGGTTGCTGGGAAGTCTGAGGATTCCGTGAATGTTAATGTTTCGGGAGTGTCTCCTCAAGGATTGGTAGGTAGAGATTTTGAGGATTCAGATGGTACTGGAATTTTAAATAGGGTGAGAAGGGGCTGGTTAAGAAGATTGAGATCGATGACGTGCATGGTTGATACGCAAGGGGAAGGCGATGATTATAATGGGAGAGGAGATGGGAGAATGTCAGTCTCAGGGTGTAGGCTTCAGAAAGTTAAGGTTCGTCAAAGTAAGAAAAATATCAAGGAGCTTTCGTCGCTTTACTTGAGGCAAGATATCCAAGCGCACGAAGGTTCAATTTTGACGATGAAATTCAGTCCCGATGGACAGTATCTAGCCACTGGCGGCGAAGATGGTGTGGTTCGTGTGTGGCAAGTAGTTGAGGAGGATAGATGTAATGAAATTCATATTCCAGAAATTGACCCTTCATGCATTTACTTTACAGTGAATAATCTCTCTCAATTGACACCATTGTTTATGGATAAGGAAAAACTTAGCCAACTGAAGAGTATGAGAAAAACATCAGATTCCGCTTGTGTCGTTTTCCCGCCTAAGATCTTCCGGTTGTTGGAAAAACCATTGCACGAGTTCCGTGGTCATGGAAGTGAAGTTTTGGATCTATCTTGGTCGAAGAAGAATTATCTTCTATCATCGTCAGTTGACAAAACTGTCCGACTATGGAAAGCGAATCATGAGCATTGCTTGAAAGTGTTTTCACACAGTAATTATGTGACATGTATACAATTCAATCCTGTCGATGAAGATTATTTCATTAGCGGATCCATAGACGGGAAAGTGCGAATATGGGCAATTCCTGATTGTCAGGTTGTTGATTGGACTGATGTCCTAGATATAGTGACTGCAGTATGTTATCGGCCCGACGGGCAGGGAGGGATTGTTGGTTCTTTGGCAGGAAATTGTCGGTTTTATAAAATATCAGATAATCACTTGCAATTAGATTCTCAACTATGCTTAATTGGTAAAAAGAAACTTCCTGGCAGAGGGATATTGGGCTTTCAGTTTCTTCCTCAAGATTCCAACAAAGTTATGGTTACCTGTGCTGATTCACAAGTTAGAATCCTTGATGGGCTTAATGTGATTTGTAAATACAAAAGCCTCAACACAGGGAGCCCAATGTGTGCATCCTTTACTTCAGACGGGAAACATATTTTATCAGCATGCGAGGACTCAAATGTATATCTATGGAACATTGATCAGGACGAGTCTAATGCCACGAAATATAAGAAAATCAGGTCTTGTGAGCGGTTTTTCTCTAATGCATCCGTTGCAGTACCTTGGCATGGTTTGAAACCTCAAGTTACTGAAAATGAACAATTGAGTGTCTTGGATAAAAAATCATCTCAAGTTTCTTTACAATTACACTCCACTCCGCCCACATCTTTCTCTTTGGGCCAAGAGTTTTTCTTGGAGTCTTTTCCGAAGGGATCTGCTACCTGGCCCGAGGAGAAGCTTCCTGTTTCAAGCTCCAAGGCTAAAAAAACATCATTTATGCATAACTCCGAATACAAGTTCTTGAAATCTTCTTGCAAGAGCTCCAACCGCGCTCACGCGTGGGGTATGGTTATCGTGACTGCAGGCTGGGACGGGAGGATAAAATCATTCCAAAATTACGGGCTACCTGTACCAGTTTGA 2151 0.4119 MGSFSGDEDCQFLDAQEDVLSIGYANSDDDNDKSLSVDFDYDVWIRSPKSVRERRGEFMKSMGMSLDGIVVENSLDVEKEEMVDRVRGSSGSEEEFSSSRLLMSCCSSVSFSEEFGLVDSNNLPCQDESLEKGVATNVDKKEEQKKHVMVNDDSDHLVVAGKSEDSVNVNVSGVSPQGLVGRDFEDSDGTGILNRVRRGWLRRLRSMTCMVDTQGEGDDYNGRGDGRMSVSGCRLQKVKVRQSKKNIKELSSLYLRQDIQAHEGSILTMKFSPDGQYLATGGEDGVVRVWQVVEEDRCNEIHIPEIDPSCIYFTVNNLSQLTPLFMDKEKLSQLKSMRKTSDSACVVFPPKIFRLLEKPLHEFRGHGSEVLDLSWSKKNYLLSSSVDKTVRLWKANHEHCLKVFSHSNYVTCIQFNPVDEDYFISGSIDGKVRIWAIPDCQVVDWTDVLDIVTAVCYRPDGQGGIVGSLAGNCRFYKISDNHLQLDSQLCLIGKKKLPGRGILGFQFLPQDSNKVMVTCADSQVRILDGLNVICKYKSLNTGSPMCASFTSDGKHILSACEDSNVYLWNIDQDESNATKYKKIRSCERFFSNASVAVPWHGLKPQVTENEQLSVLDKKSSQVSLQLHSTPPTSFSLGQEFFLESFPKGSATWPEEKLPVSSSKAKKTSFMHNSEYKFLKSSCKSSNRAHAWGMVIVTAGWDGRIKSFQNYGLPVPV 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02873 716 PRINTS G protein beta WD-40 repeat signature 423 437 IPR020472 -
Vifa2g02873 716 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Vifa2g02873 716 PRINTS G protein beta WD-40 repeat signature 381 395 IPR020472 -
Vifa2g02873 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 363 403 IPR001680 GO:0005515
Vifa2g02873 716 SUPERFAMILY WD40 repeat-like 253 707 IPR036322 GO:0005515
Vifa2g02873 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 292 IPR001680 GO:0005515
Vifa2g02873 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 435 - -
Vifa2g02873 716 SMART WD40_4 529 569 IPR001680 GO:0005515
Vifa2g02873 716 SMART WD40_4 488 528 IPR001680 GO:0005515
Vifa2g02873 716 SMART WD40_4 397 436 IPR001680 GO:0005515
Vifa2g02873 716 SMART WD40_4 438 477 IPR001680 GO:0005515
Vifa2g02873 716 SMART WD40_4 252 291 IPR001680 GO:0005515
Vifa2g02873 716 SMART WD40_4 356 394 IPR001680 GO:0005515
Vifa2g02873 716 ProSitePatterns Trp-Asp (WD) repeats signature. 556 570 IPR019775 -
Vifa2g02873 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 578 IPR001680 GO:0005515
Vifa2g02873 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 292 - -
Vifa2g02873 716 Gene3D - 497 708 IPR015943 GO:0005515
Vifa2g02873 716 Pfam WD domain, G-beta repeat 399 435 IPR001680 GO:0005515
Vifa2g02873 716 Pfam WD domain, G-beta repeat 358 394 IPR001680 GO:0005515
Vifa2g02873 716 Pfam WD domain, G-beta repeat 260 290 IPR001680 GO:0005515
Vifa2g02873 716 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 363 394 - -
Vifa2g02873 716 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 435 IPR001680 GO:0005515
Vifa2g02873 716 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 148 311 IPR011044 -
Vifa2g02873 716 Gene3D - 222 496 IPR015943 GO:0005515
Vifa2g02873 716 PANTHER WD REPEAT DOMAIN 44 7 713 IPR040324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02873 Vifa-Chr2 814491391 814494179 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02873 259 417 U-box Gene Family AT2G33340 22.995 7.56e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02873 - - gmx:100817209 975.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02873 2 814491391 814494179 Vifa2g02873 2 814491391 814494179 ECH
Vifa6g03207 6 1058452050 1058454719 Vifa2g02873 2 814491391 814494179 PCT