Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02870 ATGGATGCCACGCTCTTCGTTCTCAAGGATTACTTCGGGTTTATGAGTTTTCGACCTTATCAGCAAGAGGTTATTGAGAAAATTATTGAGAAAAGGGATTTCTTTGTAGTTATGGCTACTGGTAGTGGCAAGTCATTGTGTTATCAAGTGCCTCCGTTGGTTGTGAAAAAGACTGGGATAGTTGTAAGCCCTTTAATATCATTGATGCAAGATCAGGTTATGGCTTTGAAACAGCGAGGTGTCAAAGTTGAATATCTTTCGAGTGCTCAGAAGGATTATACTATTCAGGGTAAAGCTGAGCGTGGTCAATTTGACATTCTGTTTATGACTCCTGAGAAGGCATGCACAATTCCTACCAGTTTCTGGTCCAACTTGCTAAAGGAAGGAATTAGTCTTTTTGCTGTTGATGAAGCACATTGTATATCAGAATGGGGGCATGACTTTAGGGTAGAATACAAGCAGTTAGACAAGTTACGTGGTGTTCTGTTAGATGTTCCTTATGTTGGTCTAACTGCAACGGCTACTGAAAAGGTTCGGTTTGACATCACCAATTCCTTGAAGATGAATAATCCTTACATTGTTGTTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGTCAAGCAATTTAATCGAGGACAATATTTTATTGACGAGCTTGTTGAAGAAATTCCAAAAGAAGTTGCTAATGGTTCAACTATTATTTACTGCACAACAATCAAAGATGTAGAACAGATATATAAGTCAATAATGAACGTCGGTATAAATGCTGGAATGTACCATGGCCAAATGGATGGAAAATCACGAGAGGAGTCTCACAGATTATTTGTTAGAGATGAAAAGCAAGTCATGGTGGCTACAATTGCCTTTGGCATGGGCATAGATAAACCTAATATAAGAAAAGTGATTCATTATGGCTTCCCTAAAAATCTAGAGTCCTACTACCAGGAAAGTGGGAGATGTGGTAGAGATGGTATAGCTTCTGCTTGTTGGCTTTACTACACAAGAAGTGACTTTTCAAAGGGTGATTATTATGCTGCAGATTTAAAATCGAAAAACCAAAAAAAAAACTGTTACGGAGTCATTGCTTGA 1092 0.3828 MDATLFVLKDYFGFMSFRPYQQEVIEKIIEKRDFFVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGVKVEYLSSAQKDYTIQGKAERGQFDILFMTPEKACTIPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRFDITNSLKMNNPYIVVGSFDRPNLFYGVKQFNRGQYFIDELVEEIPKEVANGSTIIYCTTIKDVEQIYKSIMNVGINAGMYHGQMDGKSREESHRLFVRDEKQVMVATIAFGMGIDKPNIRKVIHYGFPKNLESYYQESGRCGRDGIASACWLYYTRSDFSKGDYYAADLKSKNQKKNCYGVIA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02870 363 PANTHER DNA HELICASE RECQ FAMILY MEMBER 6 352 - -
Vifa2g02870 363 Pfam Helicase conserved C-terminal domain 218 324 IPR001650 -
Vifa2g02870 363 FunFam ATP-dependent DNA helicase 1 198 - -
Vifa2g02870 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 339 IPR027417 -
Vifa2g02870 363 Gene3D - 2 198 IPR027417 -
Vifa2g02870 363 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Vifa2g02870 363 SMART helicmild6 244 325 IPR001650 -
Vifa2g02870 363 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Vifa2g02870 363 NCBIfam RecQ family ATP-dependent DNA helicase 7 350 IPR004589 GO:0004386|GO:0006310
Vifa2g02870 363 CDD DEXHc_RecQ 7 199 - -
Vifa2g02870 363 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 363 IPR001650 -
Vifa2g02870 363 Gene3D - 200 361 IPR027417 -
Vifa2g02870 363 SMART ultradead3 13 210 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02870 Vifa-Chr2 813357848 813358939 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02870 12 327 Eukaryotic Initiation Factors Gene Family AT3G19760 22.849 1.28e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02870 K03654 - gmx:100797777 603.594