Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02868 ATGGATGCCACGCTCTCCGTTCTCAAGGATTACTTCGGGTTTATGAGTTTTCGACCTTATCAGCAAGAGGCTATTGAGAAAATTATTGAGAAAAGGGATTGCTTGGTAGTTATGGCTACTGGTAGTGGCAAGTCATTGTGTTATCAAGTGCCTCCGTTGGTTGTGAAAAAGACTGGGATAGTTGTAAGCCCTTTAATATCATTGATGCAAGATCAGGTTATGGCTTTGAAACAGCGAGGTGTCAAAGCTGAATATCTTTCGAGTGCTCAGAAGGATTATACTATTCAGGGTAAAGCTGAGCGTGGTCAATTTGACATTCTGTTTATGACTCCTGAGAAGGCATGCACAATTCCTACCAGTTTCTGGTCCAACTTGCTAAAGGAAGGAATTAGTCTTTTTGCTGTTGATGAAGCACATTGTGTATCAGAATGGGGGCATGACTTTAGGGTAGAATACAAGCAGTTAGACAAGTTACGTGGTGTTCTGTTAGATGTTCCTTATGTTGGTCTAACTGCAACGGCTACTGAAAAGGTTCGGTTTGACATCACCAATTCCTTGAAGATGAATAATCCTTACATTGTTGTTGGTTCATTTGATCGCCCAAATCTTTTCTATGGTGTCAAGCAATTTAACCGAGGACAATATTTTATTGACGAGGTTGTTGAAGAAATTCCAAAAGAAGTTGCTAATGGTTCAACTATTATTTACTGCACAACAATCAAAGATGTAGAACAGATATATAAGTCAGTAATGAACGTCGGTATAAATGCTGGAATGTACCATGGCCAAATGGATGGAAAATCACGAGAGGAGTCTCACAGATTATTTGTTAGAGATGAAAAGCAAGTCATGGTGGCTACAATTGCCTTTGGCATGGGCATAGATAAACCTAATATAAGAAAAGTGATTCATTATGGCTGCCCTAAAAATCTAGAGTCCTACTACCAGGAAAGTGGGAGATGTGGTAGAGATGGTATAGCTTCTGCTTATTGGCTTTACTACACAAGAAGTGACTTTTCAAAGGGTGATTATTATGCTGCAGATTTAAAATCGGAAAACCAAAAAAAAACGGTTACAGAGTCATTGCTTGAAGCTCAACGCTATTGTTTGACGGCAACTTGCAGAAGAAAGTTCTTGCTAGAACACTTTGGAGAAAAATTTGCAGTTGATCGATGTGGAAACTGTGATAAATGCACGGTCTTGAGGCAACATCGTGACATGTCTAAAGAAGCCTTTCTTCTAATGGCTTGCATTAATTCATGCAAGGGAAGATGGGGCCTTAATATGTCGATTGACATCCTGCGCGGTTCTCGAGCAAAGAAAATAATGGAAGCTCAATATGACAAGCTTCCACTTCATGGACTTGGGAAAGCATACCAAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTCTCTAGGTTATTTGAAGGAGTTTGTGACTGATGTGTACAGAAATGTAAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCCTCATGTAGACCAGACTATCAACCTCCTTTGGTTTTTCCATTGGTTGGTGAGCTCGCAGAAGAGGAAACTAGAAGCGCAGAAGAATTCAAAATTTTGGCCGCTTCAGAATCTGAAGGCTGA 1617 0.4001 MDATLSVLKDYFGFMSFRPYQQEAIEKIIEKRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGVKAEYLSSAQKDYTIQGKAERGQFDILFMTPEKACTIPTSFWSNLLKEGISLFAVDEAHCVSEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRFDITNSLKMNNPYIVVGSFDRPNLFYGVKQFNRGQYFIDEVVEEIPKEVANGSTIIYCTTIKDVEQIYKSVMNVGINAGMYHGQMDGKSREESHRLFVRDEKQVMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRDGIASAYWLYYTRSDFSKGDYYAADLKSENQKKTVTESLLEAQRYCLTATCRRKFLLEHFGEKFAVDRCGNCDKCTVLRQHRDMSKEAFLLMACINSCKGRWGLNMSIDILRGSRAKKIMEAQYDKLPLHGLGKAYQANWWKALGHQLISLGYLKEFVTDVYRNVSVSSKGEQFLASCRPDYQPPLVFPLVGELAEEETRSAEEFKILAASESEG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02868 538 Gene3D - 402 525 IPR036388 -
Vifa2g02868 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Vifa2g02868 538 NCBIfam RecQ family ATP-dependent DNA helicase 6 457 IPR004589 GO:0004386|GO:0006310
Vifa2g02868 538 Pfam RQC domain 403 499 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vifa2g02868 538 CDD DEXHc_RecQ 5 199 - -
Vifa2g02868 538 FunFam ATP-dependent DNA helicase 401 525 - -
Vifa2g02868 538 PANTHER DNA HELICASE RECQ FAMILY MEMBER 5 472 - -
Vifa2g02868 538 Pfam Helicase conserved C-terminal domain 219 324 IPR001650 -
Vifa2g02868 538 SUPERFAMILY "Winged helix" DNA-binding domain 403 499 IPR036390 -
Vifa2g02868 538 Gene3D - 2 198 IPR027417 -
Vifa2g02868 538 SMART ultradead3 13 210 IPR014001 -
Vifa2g02868 538 FunFam ATP-dependent DNA helicase 1 198 - -
Vifa2g02868 538 Gene3D - 200 401 IPR027417 -
Vifa2g02868 538 SMART helicmild6 244 325 IPR001650 -
Vifa2g02868 538 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Vifa2g02868 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 339 IPR027417 -
Vifa2g02868 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 364 IPR001650 -
Vifa2g02868 538 SMART RQC_2 406 510 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vifa2g02868 538 Pfam RecQ zinc-binding 350 399 IPR032284 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02868 Vifa-Chr2 813340276 813341892 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02868 12 338 Eukaryotic Initiation Factors Gene Family AT3G19760 22.965 2.92e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02868 K03654 - gmx:100797777 875.159