Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02864 ATGGCGTTATCAACTCCTCCACAAATACAGAGATTCCTCTTAACCAAACTCCATAAACGCTCCTCCACCACCTCTTCCAAATCCAACAACCTCCACAAAAATAGAACCATAAACATCTTCAGTGCCATCACCAACAACCGAAGAAGCCGGTGCTACTCTGCCATAGCCATTGACGCACCTTCCTCTTTGACGGACTCTCCTCCTATTAGATGGGGATCCGTTTCCTTGCAAGGTCCACGCGAAGAAATGGAAGATGATATTCTTCTTCGACCCGATTGTCTTCAAGGTTATTCTTTCGCTGCTGTGTTTGATGGCCATGGAGGGTTTGCGTCTGTCCAGTTTCTCAGGGATGAACTATACAAGGAGTGTTTTGAAGCTCTACAAGGTGGGTTAGTATTGCTTGGGAAAGATTACAAAGCTGTTGAAGAAGCAATAAAACAGGCATTTGCAAAGGCAGATACGAGTTTGTTGAAATGGCTTGAAATGAAAGGGGGAGAGGAGGATGAATCAGGTGCTACAGCAACTGCCATATTCCTTGGGGATAATAAGCTGCTAATTTCACATATTGGTGACTCATCTGTGGTTTTATGCAGATCTGGAAAACCAGAATTGCTGACTAGTCCTCACCGTCCCTATGGGAGCAACAAGGCTTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATTGTCAATGGTAGGATTTGTGGAGATATCGCTGTATCTCGTGCATTTGGGGACATTCGATTCAAAACGAAGAAGAATGAGATGCTAAGAAAAGGAGTTCAGGAAGGAAGATGGACAGAAAAGTTCATTTCTCGTGTACAATTCAACGACGACTTGGTTGTTGCACGCCCTGATATTTATCAAGTATCTCTTGGCTCAGATGCAGAATTTATAGTCTTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGATGCAGTTTCTTTTGTGAGGGAGCAACTACGAAAACATGGAAACACACAGCTAGCTTGTGAATCCCTTGCACAAGTCGTTTTGGACCAACGTACACAGGATAATGTCAGCATTATAATTGCCGATCTAGGGAAGACAGATTGGAAGAATGTGCCACTGCAGAAACAAAATGTCATAGTTGAGCTTGTCCAGGCCATCGCCACGGTTGGAATTGTGTCTATTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG 1203 0.4364 MALSTPPQIQRFLLTKLHKRSSTTSSKSNNLHKNRTINIFSAITNNRRSRCYSAIAIDAPSSLTDSPPIRWGSVSLQGPREEMEDDILLRPDCLQGYSFAAVFDGHGGFASVQFLRDELYKECFEALQGGLVLLGKDYKAVEEAIKQAFAKADTSLLKWLEMKGGEEDESGATATAIFLGDNKLLISHIGDSSVVLCRSGKPELLTSPHRPYGSNKASLQEIKRIREAGGWIVNGRICGDIAVSRAFGDIRFKTKKNEMLRKGVQEGRWTEKFISRVQFNDDLVVARPDIYQVSLGSDAEFIVLASDGLWDYMSSSDAVSFVREQLRKHGNTQLACESLAQVVLDQRTQDNVSIIIADLGKTDWKNVPLQKQNVIVELVQAIATVGIVSIGIWFSSQLSL 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02864 400 CDD PP2Cc 69 359 IPR001932 -
Vifa2g02864 400 Pfam Protein phosphatase 2C 72 352 IPR001932 -
Vifa2g02864 400 PANTHER PROTEIN PHOSPHATASE 2C 33 357 IPR015655 GO:0004722|GO:0006470
Vifa2g02864 400 ProSitePatterns PPM-type phosphatase domain signature. 99 107 IPR000222 GO:0043169
Vifa2g02864 400 Gene3D - 69 366 IPR036457 -
Vifa2g02864 400 ProSiteProfiles PPM-type phosphatase domain profile. 70 359 IPR001932 -
Vifa2g02864 400 SUPERFAMILY PP2C-like 64 360 IPR036457 -
Vifa2g02864 400 SMART PP2C_4 60 357 IPR001932 -
Vifa2g02864 400 FunFam Protein phosphatase 2C 57 69 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02864 Vifa-Chr2 812943105 812946827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02864 7 336 PP2C-type Phosphatase Gene Family AT4G27800 60.303 4.03e-144 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02864 K04457 - vra:106776113 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02864 2 812943105 812946827 Vifa2g02864 2 812943105 812946827 ECH
Vifa2g02864 2 812943105 812946827 Vifa1g07029 1 1086831130 1086832509 PCT