Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02856 ATGGAGTTCTACGGCGAACATGAAATTGCTCTAGCTTCCAACTGCTATTGCAATACTCAACCATTGCAAGACGACACAGACAAAATCACTGATTTTTCGCGATTTGAGGGTTTCCCTGAGTTTGATTGGGAAACTGAGGTATCATGCCAAAGCAATCACCTTTACGTCAATGAGTTCAAGGATCTTGAAATTTTCAACTTCCATTTCAACCTCCCACTCTTTCATGAAAATTTTGAGGTTAACAACCAAAACCCCCTCAATGTTGTCTTTCCTGTATTGGAACAATGCAGTGAGAAAGATGAGAGTATTGGCGAGTGTAGTTTTGCTGAATCTTCCGTGAAAACCGGAAATGCGTTTTCGAGGTTTGTGAAGAAAGAGGAGGAATATGAGTATCAAGAAGAGAGTCGATTGCCATTGCCATTGCCATTGTCAAGTGGTAGTACTAGTTTGAGTAGGAACAAGAAGTCTTGTTTGCAATATGATGAGATTAAGAAGCATTTTGATGTTCCTATAACACTAGCTGCTAAAAGATTGAACATTGGTGTGACCCTTTTAAAGAAGAGGTGCAGAGAGCTCAATATCACAAGGTGGCCTCACAGAAAGTTGAAGAGCTTGATGTTACTCATGGACAACCTTAAGGAAATGGGATTGGACGACGAGGTTGCTAAGTTGGAGAAGCAGAAAAAATTGTTGGAGAAAATTCCGGGTATGGAATTGAATGAAGAAACCAAGAAACTGAGGCAGGTTTGTTTCAAAAATTGCTACAAGAAGAGAAGATTACTTACCTACCATTGTTGA 798 0.3985 MEFYGEHEIALASNCYCNTQPLQDDTDKITDFSRFEGFPEFDWETEVSCQSNHLYVNEFKDLEIFNFHFNLPLFHENFEVNNQNPLNVVFPVLEQCSEKDESIGECSFAESSVKTGNAFSRFVKKEEEYEYQEESRLPLPLPLSSGSTSLSRNKKSCLQYDEIKKHFDVPITLAAKRLNIGVTLLKKRCRELNITRWPHRKLKSLMLLMDNLKEMGLDDEVAKLEKQKKLLEKIPGMELNEETKKLRQVCFKNCYKKRRLLTYHC 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02856 265 ProSiteProfiles RWP-RK domain profile. 143 226 IPR003035 -
Vifa2g02856 265 PANTHER PROTEIN RKD4 158 261 IPR044607 GO:0003700
Vifa2g02856 265 Pfam RWP-RK domain 158 205 IPR003035 -
Vifa2g02856 265 Coils Coil 214 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02856 Vifa-Chr2 811104075 811105341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02856 158 261 AtRKD Transcription Factor Family AT5G53040 58.654 1.61e-34 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vifa2g02856 RWP-RK 3.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02856 - - psat:127081861 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02856 2 811104075 811105341 Vifa2g02856 2 811104075 811105341 ECH