Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02852 ATGAGGATGATAGCTCCAGCTCAGCCCCCCATGCACCACAACCTGGCCCCATCTTCACCATTCACAGCAAACTCAAACTCCCCTGCAGTAGACTTCAGTCCACCTCTAATAGCAATGGTCGTCATCGTCGCCGCCGCCTTCGTCATCGTAACCTACTCCCGCCTCCTCACCCGCCACCTCTCACCTCCCATCCACCGCCTTATCCAACGCTTTCATAGCCGACGCTTCCTCCCTCCCTCCTCCTCATTAGGCGACATCGAATCACTGCAATACGAATCATCAACGTTCGAAGCCCCACACACTTTCGGCTTAGACGAATCCATCATCAAAACCATTCCATTCTTCATCTACACAACGAAATACGAACAAGAAACCCTCCGTGACTGCGCCGTTTGTTTACTTGAATTCGAAGATCACGATTATGTTCGTACTTTGCCTCTCTGTTCGCACACTTTTCATCTCGATTGCATTGACGCTTGGCTTCGTTCACACGCTAACTGTCCTCTCTGTCGCGGTGTTCTTCTCTGTGAGTCTCCTTTCAGACCTCTCATGGCCGCTAGAATCCGTCCATCCTTTCACGACCAAACTAATATTCTCCACCTCGATACGGTTCAACCGGTGCCGGAGATTACTCCTCATTCTCCGGTTATGAGTAATACCGATGAGAATCAGTTTAACAGACGGGAGGATTTTCTGTTGAAACGCTCTTATTCGTTTGGATTTGAGAGGAGTTTACCGTCAGAGAGAATGATAACCGACCCTGCCACAACCTCCCCGTGGCGGTATCGGAGAGGGAACACAAGCTTCTGGAGTAAAAGACCGTCGCCGTTTGGTTCATTAGGGAAATCGAGAGTGTTTTCATTCAGATATTATAGAGGAATGAAATCTCCGTTTTTTCGCCGGCGAGGATTCTTCCCGTTATCGGAGTCAAGTAATAGGTACGCCGACGGAGGAACCTCGTGGCGGAGAAGCAAATCAATAGCAAGTCCAATGTTCTTGAGATCATCAGCGGCGGTATTCTCGTCGAGCCGTTTAAGATGCGGCGATCCCGAAGCGTTACTATCGCCGGAGAGATTCAACCGTCGACGATGA 1092 0.4991 MRMIAPAQPPMHHNLAPSSPFTANSNSPAVDFSPPLIAMVVIVAAAFVIVTYSRLLTRHLSPPIHRLIQRFHSRRFLPPSSSLGDIESLQYESSTFEAPHTFGLDESIIKTIPFFIYTTKYEQETLRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRGVLLCESPFRPLMAARIRPSFHDQTNILHLDTVQPVPEITPHSPVMSNTDENQFNRREDFLLKRSYSFGFERSLPSERMITDPATTSPWRYRRGNTSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSNRYADGGTSWRRSKSIASPMFLRSSAAVFSSSRLRCGDPEALLSPERFNRRR 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02852 363 CDD RING-H2_EL5-like 128 171 - -
Vifa2g02852 363 FunFam RING-H2 finger protein ATL65 97 175 - -
Vifa2g02852 363 SUPERFAMILY RING/U-box 109 180 - -
Vifa2g02852 363 SMART ring_2 129 170 IPR001841 -
Vifa2g02852 363 PANTHER RING-H2 FINGER PROTEIN ATL16 11 187 IPR044600 GO:0016567|GO:0016740
Vifa2g02852 363 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vifa2g02852 363 Pfam Ring finger domain 128 171 IPR001841 -
Vifa2g02852 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 175 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02852 Vifa-Chr2 808511057 808512148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02852 18 362 C3H Transcription Factor Family AT3G18930 48.980 8.36e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02852 - K19041 gmx:100806115 486.108