Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02838 ATGATTATGAACTTCGATCGTTTTTCGGGACTACCTGATAACGGAACATTCACTATCGGCTTCACTCCATCAGACACTGATAATCGATTATTCACGTTAGGCATTTGGTTTGCTAGCCTTCCAGGAGATCGAACTTTCGTTTGGTCACCCAATAGAAACTCACCTACATCTCAAGAAGCAATTTTGGAGCTTGACACAACAGGAAACCTCGTCCTCGTCGACAAAAAAGTCACCATATGGGCCTCAAACACATCAAATGCTAATGTAGAATCAGCAACCATGTCAGAATCTGGTAACTTCATCCTTCACAGCACAAACAACCACCCTATATGGCAGAGTTTTTCTCAACCTTCAAACACACTTCTCCCAAACCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAATCCTCATCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAGCAACCAACTTCTTTAAGTCTTGCACTAACTTACAATCTTCCAGAAAGTTACCAAACTTTTGATGAAAATGAATCATATGCAAACTATTCTTATTGGCAAGGTCCTGATATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAAGCCGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGTTAACCGTTCTTAGGAGACTGACACTCGAAGAGAATGGAAATCTGAGGTTATACCGATGGGAAGACGTAAATGGATCGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTATGTAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCTAAACTAGGAAGAGATGGACAATGTTATGAGAATTCATCTCTGGTTGGAAAATGTACTAATGGAAAAAACGAAAACAAGACATCGAGTTTTAGAATTTCGACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCATGTTTGTCCGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCTACTTTGTTTGTGAAGGTTCGAGCAAATAGTTCATGGACACCAGAAGGACAAGAGGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCACTATGTTACTGTATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAATGTTCATTGGTCTTATCAGGTGCTCCAGTGAATTTTACTTACCGCGCTTTACAGATCAGGACAAGTAACTTTTCGCAGCTTCTAGGAACAGTTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTTGTTCGTTTATGTGGTTTTTGTTCTGAGGGACCTCAGAGGCTTTTAGTTTATGAGTTCATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTCGAGGACCAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAACAAGATAATACATTGTGACATCAAGCCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTAAGAGGCACTAGAGGCTATTTGGCACCAGAATGGGTTAGTAATTGA 2040 0.3863 MIMNFDRFSGLPDNGTFTIGFTPSDTDNRLFTLGIWFASLPGDRTFVWSPNRNSPTSQEAILELDTTGNLVLVDKKVTIWASNTSNANVESATMSESGNFILHSTNNHPIWQSFSQPSNTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDVNGSKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKLGRDGQCYENSSLVGKCTNGKNENKTSSFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWTPEGQEGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLTMLLYYSVHRKRTLKREMECSLVLSGAPVNFTYRALQIRTSNFSQLLGTVGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNFVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGPDRLLDWQTRFDIAKNTAQGIAYFHEQCRNKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWVSN 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02838 679 Pfam S-locus glycoprotein domain 225 305 IPR000858 GO:0048544
Vifa2g02838 679 Gene3D Phosphorylase Kinase; domain 1 466 577 - -
Vifa2g02838 679 SMART blect_4 4 117 IPR001480 -
Vifa2g02838 679 FunFam Protein kinase superfamily protein 578 653 - -
Vifa2g02838 679 ProSiteProfiles Bulb-type lectin domain profile. 1 115 IPR001480 -
Vifa2g02838 679 Gene3D Transferase(Phosphotransferase) domain 1 578 679 - -
Vifa2g02838 679 Gene3D - 10 116 IPR036426 -
Vifa2g02838 679 CDD B_lectin 11 117 IPR001480 -
Vifa2g02838 679 PANTHER OS07G0415500 PROTEIN 14 679 - -
Vifa2g02838 679 ProSiteProfiles Protein kinase domain profile. 502 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02838 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Vifa2g02838 679 Pfam Protein kinase domain 505 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02838 679 SUPERFAMILY Protein kinase-like (PK-like) 482 678 IPR011009 -
Vifa2g02838 679 SUPERFAMILY alpha-D-mannose-specific plant lectins 45 119 IPR036426 -
Vifa2g02838 679 FunFam S-receptor-like serine/threonine-protein kinase 471 577 - -
Vifa2g02838 679 SMART serkin_6 502 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02838 679 Pfam D-mannose binding lectin 45 132 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02838 Vifa-Chr2 792710347 792712705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02838 448 677 Receptor kinase-like Gene Family AT5G20050 43.320 5.60e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g02838 Pkinase 3.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02838 - - tpra:123904109 1229.93