Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02836 ATGGCTGTGAAGTACTCAAAACAGCTGCTGCTGATAGTGGTTGTTGCTGTCTTTCATACAAAAACAGCAACTCAACCGATGTCACATCCAAACTGTCCAACAATGTGCGGTTCGGTCACCATTCCTTTTCCATTTGGAACCACCAAAGATTGTTCCCTAGACAACACTTTTCTCATCAACTGCAACAAAACATCTTCAACTACATCAAACTCAACAGCACAAGTACCTTTCTTGCAAAAAACCAAACGAAGGGTCCTAAATATCTCACTCGATGGTGAACTGCGCGTTGCATGGCCAGTAGCCAGCAATTGCTACACTGAAAAGGTTGCACTCGTGGACCAAATACCTCAGGAGATCATCATGACTTATTTTCCCATCTCGCCAACTCGAAACAAGTTGATAGCAGTTGGCTGTGACACATTTGGAGTATTCTTCGCAATGGATTCTGGTGGAGAAAATTACACCAGTGGATGTGTGACTTTGTGTGGCAGGCGTGATGAAATTGTGGCCAATGAATCTTGTTCTGGCACTGGCTGTTGCGAAGTTTCAATACCCCACGGTCATGTGCTGACGAGAGTAGTCTATGCATCTCAAAGCATATTCAGTAACCACTCGTCAGTACATAACTTGGGTCCATGTGGTTATGCATTTTTGGTTGAAAATGGAAACTACAGGTTGGAATACAAAGACCTCTTCAAATTGGAGAAGGAGTTTCCAGTGGTGTTGGATTGGACAATAGGGAACAAAACGTGCGAGCAAGCAAAGAAGGATATTTCAAGTTATGCATGTAAGGCAGACAAAAGTACATGTTACCATGCAGGAACCAAAAAACCTGGTTATCTTTGCAAATGCCTTGAAGGATATCAGGGAAATCCTTACTTCAATCATGGTTGCCAAGGATATGAAGGAAACGGGAAAAATAATGGAACAAGATGCAGTCTCAAATCTAGAAAAGAGCTCATGTTGATCATTGCATTGAGTGTCTGTGTAAGCGTCGTAGGACTATTAATGGGAAGCATTTATGCATATTGGGTATTGAAGAAAATAAAGCTTATAAAACTTAAAGAACAGTTTTTTCAACAAAACGGTGGCTTACTCTTACAACAACAGCTAGTGAAGCATGGAGGATCAGTAGAAGCAACTAAAGTCTTCACTTCTGAAGAGCTAAATAAAGCAACTAACAACTTCGATGAAGAAAATATCATAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTACAGGATAACAGAACCGTAGCAATAAAGAAGTCGAAAATCAATGACTCGAGTCAGGTTGAGCCGTTCATCAATGAAGTGATCCTACTCTCTCAAATCAACCATAGAAATGTGGTAAAACTATTGGGTTGTTGTTTAGAGACAGAAGTCCCGTTGCTTGTTTACGAATTTGTTTCCAACGGTACTGTTTATGAGCATCTTCATGATCTAAACCAACCTTTAAAGCTTACTTGGAAAATAAGACTAAGAATAGCAAAAGAAACTGCTGGAGTCCTGGCATACTTGCATTCTGCGGCTTCTACACCGATCATACATAGAGATGTGAAATCCACAAATATACTACTAGATGACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCAAGGATAGTTCCTCTTGATAAATCTCAGATAACAACTCTAGTGCATGGGACAATGGGGTATCTTGACCCAGAATACTTCCACACAAGCCAGTTAACAGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCTTAGCAGAGCTACTGACAGGAAAGAAAGCATTGTGTTTTGACAGGCCAGAGGTAGACAGAAACCTTGCACTGTACTTTGTTTCTTCAATGAAAGAAGGTCTGCTATTTCATATTCTGGACAAAAGTATTGATGAGCCGAATGTCGAGCATCTTAAGGAAGTTGCATTAATTGCAGAAAGGTGTTTAAGGGTGAAGAGTGAGGAAAGACCAACGATGAAAGAAGTGGCAATGGGACTTGAAGGAATATTAGTTATTGAAGAGCAGTGTTGGGGAAGTGACAATTTGCCTTCGGAAGAGACTGAAAACGTGCTCAATGGAGCACCATCTGTTATCAATGTCGAAGATAGTGTTGGCGGAAGTGGCATTAATTCTTCGTACTCATATGGTACAAACCAGATTTTGATGTCAGTGATTGGTGGAAGATGA 2184 0.4084 MAVKYSKQLLLIVVVAVFHTKTATQPMSHPNCPTMCGSVTIPFPFGTTKDCSLDNTFLINCNKTSSTTSNSTAQVPFLQKTKRRVLNISLDGELRVAWPVASNCYTEKVALVDQIPQEIIMTYFPISPTRNKLIAVGCDTFGVFFAMDSGGENYTSGCVTLCGRRDEIVANESCSGTGCCEVSIPHGHVLTRVVYASQSIFSNHSSVHNLGPCGYAFLVENGNYRLEYKDLFKLEKEFPVVLDWTIGNKTCEQAKKDISSYACKADKSTCYHAGTKKPGYLCKCLEGYQGNPYFNHGCQGYEGNGKNNGTRCSLKSRKELMLIIALSVCVSVVGLLMGSIYAYWVLKKIKLIKLKEQFFQQNGGLLLQQQLVKHGGSVEATKVFTSEELNKATNNFDEENIIGQGGQGTVYKGVLQDNRTVAIKKSKINDSSQVEPFINEVILLSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTVYEHLHDLNQPLKLTWKIRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDDNLTAKVSDFGASRIVPLDKSQITTLVHGTMGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALCFDRPEVDRNLALYFVSSMKEGLLFHILDKSIDEPNVEHLKEVALIAERCLRVKSEERPTMKEVAMGLEGILVIEEQCWGSDNLPSEETENVLNGAPSVINVEDSVGGSGINSSYSYGTNQILMSVIGGR 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02836 727 CDD STKc_IRAK 402 668 - -
Vifa2g02836 727 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 669 IPR045274 GO:0007166
Vifa2g02836 727 Gene3D Transferase(Phosphotransferase) domain 1 472 679 - -
Vifa2g02836 727 FunFam Wall-associated receptor kinase 2 366 471 - -
Vifa2g02836 727 Gene3D Phosphorylase Kinase; domain 1 371 471 - -
Vifa2g02836 727 SUPERFAMILY Protein kinase-like (PK-like) 379 663 IPR011009 -
Vifa2g02836 727 Pfam Protein kinase domain 397 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02836 727 SMART serkin_6 396 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02836 727 Pfam Wall-associated receptor kinase galacturonan-binding 32 95 IPR025287 GO:0030247
Vifa2g02836 727 ProSiteProfiles Protein kinase domain profile. 396 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02836 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Vifa2g02836 727 FunFam Wall-associated receptor kinase 2 472 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02836 Vifa-Chr2 792044385 792047164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02836 12 684 Receptor kinase-like Gene Family AT1G21230 43.733 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa2g02836 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02836 - - mtr:25489730 967.222