Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02835 ATGGCTGTGAAGTACTCAAAACAGCTGCTGCTGATAGTGGTTGTTGCTGTCTTTCATACAAAAACAGCAACTCAACCGATGTCACATCCAAACTGTCCAACAATGTGCGGTTCGGTCACCATTCCTTTTCCATTTGGAACCACCAAAGATTGTTCCCTAGACAACACTTTTCTCATCAACTGCAACAAAACATCTTCAACTACATCAAACTCAACAGCACAAGTACCTTTCTTGCAAAAAACCAAACGAAGGGTCCTAAATATCTCACTCGATGGTGAACTGCGCGTTGCATGGCCAGTAGCCAGCAATTGCTACACTGAAAAGGTTGCACTCGTGGACCAAATACCTCAGGAGATCATCATGACTTATTTTCCCATCTCGCCAACTCGAAACAAGTTGATAGCAGTTGGCTGTGACACATTTGGAGTATTCTTCGCAATGGATTCTGGTGGAGAAAATTACACCAGTGGATGTGTGACTTTGTGTGGCAGGCGTGATGAAATTGTGGCCAATGAATCTTGTTCTGGCACTGGCTGTTGCGAAGTTTCAATACCCCACGGTCATGTGCTGACGAGAGTAGTCTATGCATCTCAAAGCATATTCAGTAACCACTCGTCAGTACATAACTTGGGTCCATGTGGTTATGCATTTTTGGTTGAAAATGGAAACTACAGGTTGGAATACAAAGACCTCTTCAAATTGGAGAAGGAGTTTCCAGTGGTGTTGGATTGGACAATAGGGAACAAAACGTGCGAGCAAGCAAAGAAGGATATTTCAAGTTATGCATGTAAGGCAGACAAAAGTACATGTTACCATGCAGGAACCAAAAAACCTGGTTATCTTTGCAAATGCCTTGAAGGATATCAGGGAAATCCTTACTTCAATCATGGTTGCCAAGATATTGATGAATGCAAGAAATCCAATGATTGTGTTAAGGGAGCAACATGCCACAATTTTCCTGGAAGCTATCGTTGTAAATGCCCAACAGGATATGAAGGAAACGGGAAAAATAATGGAACAAGATGCAGTCTCAAATCTAGAAAAGAGCTCATGTTGATCATTGCATTGAGTGTCTGTGTAAGCGTCGTAGGACTATTAATGGGAAGCATTTATGCATATTGGGTATTGAAGAAAATAAAGCTTATAAAACTTAAAGAACAGTTTTTTCAACAAAACGGTGGCTTACTCTTACAACAACAGCTAGTGAAGCATGGAGGATCAGTAGAAGCAACTAAAGTCTTCACTTCTGAAGAGCTAAATAAAGCAACTAACAACTTCGATGAAGAAAATATCATAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTACAGGATAACAGAACCGTAGCAATAAAGAAGTCGAAAATCAATGACTCGAGTCAGGTTGAGCCGTTCATCAATGAAGTGATCCTACTCTCTCAAATCAACCATAGAAATGTGGTAAAACTATTGGGTTGTTGTTTAGAGACAGAAGTCCCGTTGCTTGTTTACGAATTTGTTTCCAACGGTACTGTTTATGAGCATCTTCATGATCTAAACCAACCTTTAAAGCTTACTTGGAAAATAAGACTAAGAATAGCAAAAGAAACTGCTGGAGTCCTGGCATACTTGCATTCTGCGGCTTCTACACCGATCATACATAGAGATGTGAAATCCACAAATATACTACTAGATGACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCAAGGATAGTTCCTCTTGATAAATCTCAGATAACAACTCTAGTGCATGGGACAATGGGGTATCTTGACCCAGAATACTTCCACACAAGCCAGTTAACAGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCTTAGCAGAGCTACTGACAGGAAAGAAAGCATTGTGTTTTGACAGGCCAGAGGTAGACAGAAACCTTGCACTGTACTTTGTTTCTTCAATGAAAGAAGGTCTGCTATTTCATATTCTGGACAAAAGTATTGATGAGCCGAATGTCGAGCATCTTAAGGAAGTTGCATTAATTGCAGAAAGGTGTTTAAGGGTGAAGAGTGAGGAAAGACCAACGATGAAAGAAGTGGCAATGGGACTTGAAGGAATATTAGTTATTGAAGAGCAGTGTTGGGGAAGTGACAATTTGCCTTCGGAAGAGACTGAAAACGTGCTCAATGGAGCACCATCTGTTATCAATGTCGAAGATAGTGTTGGCGGAAGTGGCATTAATTCTTCGTACTCATATGGTACAAACCAGATTTTGATGTCAGTGATTGGTGGAAGATGA 2274 0.4077 MAVKYSKQLLLIVVVAVFHTKTATQPMSHPNCPTMCGSVTIPFPFGTTKDCSLDNTFLINCNKTSSTTSNSTAQVPFLQKTKRRVLNISLDGELRVAWPVASNCYTEKVALVDQIPQEIIMTYFPISPTRNKLIAVGCDTFGVFFAMDSGGENYTSGCVTLCGRRDEIVANESCSGTGCCEVSIPHGHVLTRVVYASQSIFSNHSSVHNLGPCGYAFLVENGNYRLEYKDLFKLEKEFPVVLDWTIGNKTCEQAKKDISSYACKADKSTCYHAGTKKPGYLCKCLEGYQGNPYFNHGCQDIDECKKSNDCVKGATCHNFPGSYRCKCPTGYEGNGKNNGTRCSLKSRKELMLIIALSVCVSVVGLLMGSIYAYWVLKKIKLIKLKEQFFQQNGGLLLQQQLVKHGGSVEATKVFTSEELNKATNNFDEENIIGQGGQGTVYKGVLQDNRTVAIKKSKINDSSQVEPFINEVILLSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTVYEHLHDLNQPLKLTWKIRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDDNLTAKVSDFGASRIVPLDKSQITTLVHGTMGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALCFDRPEVDRNLALYFVSSMKEGLLFHILDKSIDEPNVEHLKEVALIAERCLRVKSEERPTMKEVAMGLEGILVIEEQCWGSDNLPSEETENVLNGAPSVINVEDSVGGSGINSSYSYGTNQILMSVIGGR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02835 757 Pfam Calcium-binding EGF domain 300 342 IPR001881 GO:0005509
Vifa2g02835 757 SUPERFAMILY EGF/Laminin 299 337 - -
Vifa2g02835 757 SMART egf_5 250 299 IPR000742 -
Vifa2g02835 757 SMART egf_5 303 343 IPR000742 -
Vifa2g02835 757 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 316 327 IPR000152 -
Vifa2g02835 757 Pfam Wall-associated receptor kinase galacturonan-binding 32 95 IPR025287 GO:0030247
Vifa2g02835 757 ProSiteProfiles Protein kinase domain profile. 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02835 757 SUPERFAMILY Protein kinase-like (PK-like) 409 693 IPR011009 -
Vifa2g02835 757 ProSitePatterns Calcium-binding EGF-like domain signature. 300 325 IPR018097 GO:0005509
Vifa2g02835 757 Pfam Protein kinase domain 427 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02835 757 Gene3D Laminin 261 337 - -
Vifa2g02835 757 Gene3D Phosphorylase Kinase; domain 1 401 501 - -
Vifa2g02835 757 FunFam Wall-associated receptor kinase 2 502 718 - -
Vifa2g02835 757 ProSiteProfiles EGF-like domain profile. 300 343 IPR000742 -
Vifa2g02835 757 SMART serkin_6 426 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02835 757 SMART egfca_6 300 343 IPR001881 GO:0005509
Vifa2g02835 757 FunFam Wall-associated receptor kinase 2 396 501 - -
Vifa2g02835 757 FunFam Fibrillin 2 295 338 - -
Vifa2g02835 757 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 699 IPR045274 GO:0007166
Vifa2g02835 757 Gene3D Transferase(Phosphotransferase) domain 1 502 709 - -
Vifa2g02835 757 CDD STKc_IRAK 432 698 - -
Vifa2g02835 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 547 559 IPR008271 GO:0004672|GO:0006468
Vifa2g02835 757 CDD EGF_CA 300 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02835 Vifa-Chr2 792044385 792047164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02835 12 714 Receptor kinase-like Gene Family AT1G21230 45.265 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa2g02835 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02835 - - mtr:25489730 1036.17