Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02834 ATGGCTGTGAAGTACTCAAAACAGCTGCTGCTGATAGTGGTTGTTGCTGTCTTTCATACAAAAACAGCAACTCAACCGATGTCACATCCAAACTGTCCAACAATGTGCGGTTCGGTCACCATTCCTTTTCCATTTGGAACCACCAAAGATTGTTCCCTAGACAACACTTTTCTCATCAACTGCAACAAAACATCTTCAACTACATCAAACTCAACAGCACAAGTACCTTTCTTGCAAAAAACCAAACGAAGGGTCCTAAATATCTCACTCGATGGTGAACTGCGCGTTGCATGGCCAGTAGCCAGCAATTGCTACACTGAAAAGGTTGCACTCGTGGACCAAATACCTCAGGAGATCATCATGACTTATTTTCCCATCTCGCCAACTCGAAACAAGTTGATAGCAGTTGGCTGTGACACATTTGGAGTATTCTTCGCAATGGATTCTGGTGGAGAAAATTACACCAGTGGATGTGTGACTTTGTGTGGCAGGCGTGATGAAATTGTGGCCAATGAATCTTGTTCTGGCACTGGCTGTTGCGAAGTTTCAATACCCCACGGTCATGTGCTGACGAGAGTAGTCTATGCATCTCAAAGCATATTCAGTAACCACTCGTCAGTACATAACTTGGGTCCATGTGGTTATGCATTTTTGGTTGAAAATGGAAACTACAGGTTGGAATACAAAGACCTCTTCAAATTGGAGAAGGAGTTTCCAGTGGTGTTGGATTGGACAATAGGGAACAAAACGTGCGAGCAAGCAAAGAAGGATATTTCAAGTTATGCATGTAAGGCAGACAAAAGTACATGTTACCATGCAGGAACCAAAAAACCTGGTTATCTTTGCAAATGCCTTGAAGGATATCAGGGAAATCCTTACTTCAATCATGGTTGCCAAGAAATCAAAACTGACAAATTATTCTTAGATATTGATGAATGCAAGAAATCCAATGATTGTGTTAAGGGAGCAACATGCCACAATTTTCCTGGAAGCTATCGTTGTAAATGCCCAACAGGATATGAAGGAAACGGGAAAAATAATGGAACAAGATGCAGTCTCAAATCTAGAAAAGAGCTCATGTTGATCATTGCATTGAGTGTCTGTGTAAGCGTCGTAGGACTATTAATGGGAAGCATTTATGCATATTGGGTATTGAAGAAAATAAAGCTTATAAAACTTAAAGAACAGTTTTTTCAACAAAACGGTGGCTTACTCTTACAACAACAGCTAGTGAAGCATGGAGGATCAGTAGAAGCAACTAAAGTCTTCACTTCTGAAGAGCTAAATAAAGCAACTAACAACTTCGATGAAGAAAATATCATAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAGTTTTACAGGATAACAGAACCGTAGCAATAAAGAAGTCGAAAATCAATGACTCGAGTCAGGTTGAGCCGTTCATCAATGAAGTGATCCTACTCTCTCAAATCAACCATAGAAATGTGGTAAAACTATTGGGTTGTTGTTTAGAGACAGAAGTCCCGTTGCTTGTTTACGAATTTGTTTCCAACGGTACTGTTTATGAGCATCTTCATGATCTAAACCAACCTTTAAAGCTTACTTGGAAAATAAGACTAAGAATAGCAAAAGAAACTGCTGGAGTCCTGGCATACTTGCATTCTGCGGCTTCTACACCGATCATACATAGAGATGTGAAATCCACAAATATACTACTAGATGACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCAAGGATAGTTCCTCTTGATAAATCTCAGATAACAACTCTAGTGCATGGGACAATGGGGTATCTTGACCCAGAATACTTCCACACAAGCCAGTTAACAGAGAAGAGTGATGTCTATAGCTTTGGGGTTGTCTTAGCAGAGCTACTGACAGGAAAGAAAGCATTGTGTTTTGACAGGCCAGAGGTAGACAGAAACCTTGCACTGTACTTTGTTTCTTCAATGAAAGAAGGTCTGCTATTTCATATTCTGGACAAAAGTATTGATGAGCCGAATGTCGAGCATCTTAAGGAAGTTGCATTAATTGCAGAAAGGTGTTTAAGGGTGAAGAGTGAGGAAAGACCAACGATGAAAGAAGTGGCAATGGGACTTGAAGGAATATTAGTTATTGAAGAGCAGTGTTGGGGAAGTGACAATTTGCCTTCGGAAGAGACTGAAAACGTGCTCAATGGAGCACCATCTGTTATCAATGTCGAAGATAGTGTTGGCGGAAGTGGCATTAATTCTTCGTACTCATATGGTACAAACCAGATTTTGATGTCAGTGATTGGTGGAAGATGA 2301 0.4055 MAVKYSKQLLLIVVVAVFHTKTATQPMSHPNCPTMCGSVTIPFPFGTTKDCSLDNTFLINCNKTSSTTSNSTAQVPFLQKTKRRVLNISLDGELRVAWPVASNCYTEKVALVDQIPQEIIMTYFPISPTRNKLIAVGCDTFGVFFAMDSGGENYTSGCVTLCGRRDEIVANESCSGTGCCEVSIPHGHVLTRVVYASQSIFSNHSSVHNLGPCGYAFLVENGNYRLEYKDLFKLEKEFPVVLDWTIGNKTCEQAKKDISSYACKADKSTCYHAGTKKPGYLCKCLEGYQGNPYFNHGCQEIKTDKLFLDIDECKKSNDCVKGATCHNFPGSYRCKCPTGYEGNGKNNGTRCSLKSRKELMLIIALSVCVSVVGLLMGSIYAYWVLKKIKLIKLKEQFFQQNGGLLLQQQLVKHGGSVEATKVFTSEELNKATNNFDEENIIGQGGQGTVYKGVLQDNRTVAIKKSKINDSSQVEPFINEVILLSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTVYEHLHDLNQPLKLTWKIRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDDNLTAKVSDFGASRIVPLDKSQITTLVHGTMGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALCFDRPEVDRNLALYFVSSMKEGLLFHILDKSIDEPNVEHLKEVALIAERCLRVKSEERPTMKEVAMGLEGILVIEEQCWGSDNLPSEETENVLNGAPSVINVEDSVGGSGINSSYSYGTNQILMSVIGGR 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02834 766 Gene3D Transferase(Phosphotransferase) domain 1 511 718 - -
Vifa2g02834 766 ProSiteProfiles EGF-like domain profile. 309 352 IPR000742 -
Vifa2g02834 766 SUPERFAMILY EGF/Laminin 309 346 - -
Vifa2g02834 766 ProSitePatterns Calcium-binding EGF-like domain signature. 309 334 IPR018097 GO:0005509
Vifa2g02834 766 SUPERFAMILY Protein kinase-like (PK-like) 418 702 IPR011009 -
Vifa2g02834 766 Pfam Protein kinase domain 436 700 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02834 766 Gene3D Phosphorylase Kinase; domain 1 410 510 - -
Vifa2g02834 766 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 325 336 IPR000152 -
Vifa2g02834 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 556 568 IPR008271 GO:0004672|GO:0006468
Vifa2g02834 766 CDD EGF_CA 309 342 - -
Vifa2g02834 766 FunFam Wall-associated receptor kinase 2 405 510 - -
Vifa2g02834 766 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 22 708 IPR045274 GO:0007166
Vifa2g02834 766 SMART serkin_6 435 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02834 766 Pfam Wall-associated receptor kinase galacturonan-binding 32 95 IPR025287 GO:0030247
Vifa2g02834 766 FunFam Wall-associated receptor kinase 2 511 727 - -
Vifa2g02834 766 Pfam Calcium-binding EGF domain 309 351 IPR001881 GO:0005509
Vifa2g02834 766 SMART egfca_6 309 352 IPR001881 GO:0005509
Vifa2g02834 766 SMART egf_5 312 352 IPR000742 -
Vifa2g02834 766 SMART egf_5 250 299 IPR000742 -
Vifa2g02834 766 ProSiteProfiles Protein kinase domain profile. 435 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02834 766 FunFam Fibrillin 2 305 347 - -
Vifa2g02834 766 CDD STKc_IRAK 441 707 - -
Vifa2g02834 766 Gene3D Laminin 308 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02834 Vifa-Chr2 792044385 792047164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02834 12 723 Receptor kinase-like Gene Family AT1G21230 44.704 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa2g02834 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02834 - - mtr:25489730 1028.47