Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02825 ATGGACAGTCCTCCTTCTTCTTCTTGCATCATTGTTGCTTGTGATGCCACAAGGGACCGCAATGAGCATGAGATCAAGATCGTTATCGATCATGTTCGTGCCAGGGATATCATGCTCGCCTCTGGCGACAGGTTGCTTGTGTTATGCATCTTGCATAAGGTGTCTCATCCCATGGGGTACCAGACATTAGCATCTCCTGAGGCTTTTGCTGGCACCAACTTTCGTGCAATGGAGGAAGAAGTCAGAAAAAAAGTGCATGTTTATGCAAATGTGCTTTTATCTACTCTTGAAGATTTTGATATCCAAGGGGTTACCGTCGACATTCAAGTCACCGCAGGTTTTCCAATTAGACAAGTTATTTTACAAGAGATTAAGAACTATAATGCATCTTGGGTTGTACTTGATAGGCACCTTCGGCGCGACATGAGATATCATCTTAACAAGATACCATGTAAGGTAGCATTGGTTAAAGATGATTTGTCAGTGGATATTTGGAGATCTCACAATGCACACGACACAAATGTCACAGCAACAAAGCCTGTCTTTTCTTTGTCCAAGTTTGTGTCATTATCAGATTGCCATAGCGTGCAAGAAATTGAGCAGTCTATTGTCTCTTGCAAAAGTTATCCACATTCCTTAGCTTCTTCTGATAGCTCTGGTACTATTAAGAGCTATTCAACGCATTCATATGCCAACAGTTCATTACATTCTGGATCTTCTTCTAAACATGAAAGATCAGGTACAAGCATCAAAGGAGAGTATAGACATCTCATTACATCTCAGATTGGTCAAAAGCAAAACCAAAGTGGCTTTCTACCAAAATCTTCAGAAGCACCAATTCTATGTGCTGGCTGTGGAATAAGGACAGAGTTATCTATCAAAGAGTCAAATAGGTTCAGCTATTCTGAAATACAGCTTGCAACAAATGATTTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGCCACGTATATAAAGGTGTGCTTAAAGACGGACAACAAATTGCTGCAAAAGTAAGGAAAGAAGAAAGTTCACAAGGATTCTCTGAATTCCATTCAGAGGTTTATATCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTGGGTTACTGTTGCAAAGAAAATAAAAATATTCTTATATATGAATATATTTGTAATAAATCTCTTCATTGGCATTTATTTGAAAACAATGACGCGGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTAGGGACTGCAAAAGGGTTGCGATTTTTGCATGAAGAATGTAGAGGTGGTCCTATTATTCACAGGGACATGCGACCGAGCAATATACTTCTCACTCATGATTTTGTTCCCATGCTAGGTGATTTTGGCCTTGCCAAATGGATTACAGGTGGTGATCCTCTTGAAACAAGGATAATGGGCACATTAGGATACCTTGCTCCCGAGTATGCTGAAGATGGTATAGTTTCTGAAGGAACGGATGTGTATTCGTATGGCGTTACTTTGTTACAATTGATATCAGGACGTCCAGTGGGTAATCCAGATCAGGAACAACAATCTCTTCGACAATGGGCAGAACCAAAGATTGAGAAGTTGGCTTTACAAGAACTAGTTGATCCTCGTTTGGGAGAATCATATGACACATATGAACTATACCTTATGGCTAAAGCAGCAAATTTCTGTATGCAAAGAAAGCCTGAGATGCGTCCATCAATGAGAGAGGTTGTGCGATTTCTTGAGGGAGAAAGTTACCATTTCAATACCTAG 1764 0.398 MDSPPSSSCIIVACDATRDRNEHEIKIVIDHVRARDIMLASGDRLLVLCILHKVSHPMGYQTLASPEAFAGTNFRAMEEEVRKKVHVYANVLLSTLEDFDIQGVTVDIQVTAGFPIRQVILQEIKNYNASWVVLDRHLRRDMRYHLNKIPCKVALVKDDLSVDIWRSHNAHDTNVTATKPVFSLSKFVSLSDCHSVQEIEQSIVSCKSYPHSLASSDSSGTIKSYSTHSYANSSLHSGSSSKHERSGTSIKGEYRHLITSQIGQKQNQSGFLPKSSEAPILCAGCGIRTELSIKESNRFSYSEIQLATNDFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKEESSQGFSEFHSEVYILSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENNDAVLDWPQRYGIALGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMLGDFGLAKWITGGDPLETRIMGTLGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRPVGNPDQEQQSLRQWAEPKIEKLALQELVDPRLGESYDTYELYLMAKAANFCMQRKPEMRPSMREVVRFLEGESYHFNT 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02825 587 PANTHER OS01G0253100 PROTEIN 229 580 - -
Vifa2g02825 587 Gene3D Transferase(Phosphotransferase) domain 1 388 585 - -
Vifa2g02825 587 SUPERFAMILY Protein kinase-like (PK-like) 295 580 IPR011009 -
Vifa2g02825 587 Gene3D Phosphorylase Kinase; domain 1 286 386 - -
Vifa2g02825 587 ProSiteProfiles Protein kinase domain profile. 311 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02825 587 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Vifa2g02825 587 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 33 159 - -
Vifa2g02825 587 ProSitePatterns Tyrosine protein kinases specific active-site signature. 432 444 IPR008266 GO:0004672|GO:0006468
Vifa2g02825 587 Gene3D HUPs 5 157 IPR014729 -
Vifa2g02825 587 FunFam Lectin-domain containing receptor kinase A4.3 387 586 - -
Vifa2g02825 587 Pfam Protein kinase domain 312 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02825 587 CDD STKc_IRAK 317 580 - -
Vifa2g02825 587 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 283 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02825 Vifa-Chr2 789794814 789797762 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02825 231 581 Trihelix Transcription Factor Family AT4G32710 41.962 3.59e-77 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa2g02825 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02825 - - vun:114163670 956.822