Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02824 ATGAATAGAGATATACAACAATACCCAGTCTCATCTTCATCACATTTCCACCAACGTTTTCCAAAATCATTCTCTCTTCGTAGAAAAGTGCCATGGTGGTACCAAATACAACATCCACGTTCACCTTTCCTTGCAAAATGGAACGTAATATTCCTCTATTCTTGCCTCTTTGCTCTCTTTCTAGACCCTCTTTATTTCTATATTCCCGTCACCGGAGACAAAGCATGTTTGCAAACAGATTTAGTCCTCGGCGTTTTCGTCACGCTATTGCGTACCGTCGCTGATCTCTTCTTCTTCTTTCATATAATTCTTAAGTTTCGCACCGCCTTCAATTCTCCTACCTCTCACGTATATGGCCGCAAAGAGCTTATCACCGATCCTGGCATGATTACTCGTCGATACCTCAGGCATGATTTCATCATTGATCTTCTTGCCTGCCTTCCCTTGCCTCAGATAGTTATTTGGATTGTGATTCCGGCGACAAAAAACTCGACTGCGGCTCATTCAAACCACACACTGTCCCTAATAGTTCTAATTCAGTATATTCCAAGACTGTTTCAAATTTTTCCTTTACAACGCAGAATCTTGAAGACTAGTGGGCTTATAGCGAAAACTGCGTTGGCAGGTGCATTGTACAATCTCGGTTTCTACATGCTCGCCAGCCATGTTTTAGGAGCAACGTGGTATGTGACGTCGATTCAGAGACAATACCAATGTTGGAGAATAATGTGCAAGAAGGAAATGAATAGAACACATTCACCTTCTTGTAATCCTTCTTTTCTTGATTGTAATACTCTTAATAACCGCGAACGACAAGTTTGGTTTAGACGCACGAGAGTCCTCTCGGCTTGCGATGCACTCAATGATAGAAACCATTTTCAGTTTGGAATGTTTGCTGATGCTTTTACTGATCATGTCTCTTCATCGAGATTCGTTCAAAAATATTTTTATTGCCTCTGGTGGGGTTTGAAAAATCTCAGTTCATATGGACAAAATCTTCAAACTAGTACTTACAGCGCTGAAACATTGTTTTCAAGTTTCATATGCATAGCAGGCCTTATCCTCTTTGCACATCTCATTGGTAACATGCAGAATTATCTGCAATCTTCAACTGCGAGACTTGAAGAGTGGAGACTTAAGCAAAAAGATACAGAAGAATGGATGAATCATCGCCAACTTCCACCAGAGCTACAAGAACGCGTTCGTCGCTTTGTTCAGTACAAATGGCTTGCCACGAGAGGTGTTGACGAAGAAGCCATTTTGAAAGCCTTGCCTATTGATCTGCGTCGGCAGATTCAGAGGCATCTCTGTCTTGACATTGTTCGCCGAGTACCGTTTTTTGGCCAAATGGATGATCAACTTCTTGATGCTATATGCGAACGTCTAGTTTCATCCTTGAACACGAAAGATTCATATATAGCTAGAGAAGGCGATCCAGTTCGCGAGATGCTTTTTATCATCCGAGGAAGTATAGAGAGTTCTACAACAGATGGTGGTCGATCAGGATTCTTCAATTCAATCACCCTAAAACCCGGTGACTTTTGTGGCGAAGAATTGCTAACATGGGCCTTAACGCCCGATCCTAGTCTTAACCTTCCCGATTCAACAAGAACCGTTAAAACAATAACCGAAGTAGAAGCATTTGCACTCAGAGCAGACGATCTAAAATTCGTGTCGAGCCAATTTAAGCGTCTGCACAGCAAGAAACTGCAGCATGCTTTCAGATACTATTCTCATCAATGGAGAGCTTGGGGTGCGTCGTTTATACAGGCCGCTTGGAGGCGTCATCGGAAGAGAGAATTGGCAATGGAGTTAATGGAAAAAGAGAATCTGTATTACGAAAATGTTATGGAGCTAGAGGATTATGAAGGGAGTGGTGCAGGAGAGAGTTCTAATGCTAGTCATGGACAGAATTTCGGTGCTACATTTTTGGCTTCGAGATTCGCTGCAAACACGAAGAAAGGCGCGGTTAAGAAGGTTACAATAATCCCAGGTGATACTAGTTTGAAAATGCCTAAGATGTTCAAGCCAACTGAGCCTGATTTCTCAACATTTCAAGAAGATTAA 2067 0.4209 MNRDIQQYPVSSSSHFHQRFPKSFSLRRKVPWWYQIQHPRSPFLAKWNVIFLYSCLFALFLDPLYFYIPVTGDKACLQTDLVLGVFVTLLRTVADLFFFFHIILKFRTAFNSPTSHVYGRKELITDPGMITRRYLRHDFIIDLLACLPLPQIVIWIVIPATKNSTAAHSNHTLSLIVLIQYIPRLFQIFPLQRRILKTSGLIAKTALAGALYNLGFYMLASHVLGATWYVTSIQRQYQCWRIMCKKEMNRTHSPSCNPSFLDCNTLNNRERQVWFRRTRVLSACDALNDRNHFQFGMFADAFTDHVSSSRFVQKYFYCLWWGLKNLSSYGQNLQTSTYSAETLFSSFICIAGLILFAHLIGNMQNYLQSSTARLEEWRLKQKDTEEWMNHRQLPPELQERVRRFVQYKWLATRGVDEEAILKALPIDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIAREGDPVREMLFIIRGSIESSTTDGGRSGFFNSITLKPGDFCGEELLTWALTPDPSLNLPDSTRTVKTITEVEAFALRADDLKFVSSQFKRLHSKKLQHAFRYYSHQWRAWGASFIQAAWRRHRKRELAMELMEKENLYYENVMELEDYEGSGAGESSNASHGQNFGATFLASRFAANTKKGAVKKVTIIPGDTSLKMPKMFKPTEPDFSTFQED 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02824 688 Gene3D - 47 370 - -
Vifa2g02824 688 Pfam Ion transport protein 47 373 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa2g02824 688 FunFam Cyclic nucleotide-gated ion channel 1 444 562 - -
Vifa2g02824 688 ProSiteProfiles cAMP/cGMP binding motif profile. 446 557 IPR000595 -
Vifa2g02824 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 23 682 - -
Vifa2g02824 688 Gene3D Helix hairpin bin 372 437 - -
Vifa2g02824 688 SMART cnmp_10 446 577 IPR000595 -
Vifa2g02824 688 FunFam Cyclic nucleotide-gated ion channel 1 373 437 - -
Vifa2g02824 688 SUPERFAMILY Voltage-gated potassium channels 39 368 - -
Vifa2g02824 688 Gene3D Jelly Rolls 444 564 IPR014710 -
Vifa2g02824 688 CDD CAP_ED 446 577 IPR000595 -
Vifa2g02824 688 SUPERFAMILY cAMP-binding domain-like 375 571 IPR018490 -
Vifa2g02824 688 Pfam Cyclic nucleotide-binding domain 469 556 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02824 Vifa-Chr2 789593948 789596699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02824 18 682 Ion Channels AT3G48010 64.017 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02824 K05391 - gmx:100783672 1186.02