Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02813 ATGGATGATTCTTCTTCAGTTGCTGAAGAATCCAAAACTTGTCCTCGTGGTCACTGGAGACCTGCTGAAGACGAAAAGCTTCGCCAACTTGTTGAACAATATGGTGCACAAAATTGGAACTCTATTGCTGAAAAACTCCAAGGAAGATCAGGAAAAAGTTGTAGGTTAAGGTGGTTCAATCAGTTAGATCCAAGAATTAACAGAAGACCTTTTACAGAAGATGAAGAAGAGAGACTACTCGCGGCGCATCGTATCCACGGAAACAAATGGGCACTAATAGCAAGACTTTTTCCAGGTAGAACTGATAATGCTGTGAAGAATCATTGGCATGTTATTATGGCAAGAAAACAAAGGGAACAATCTAAGTTATGTGGTAAAAGAACCTTTCAAGAAGTTTTCAGTAACTCCTCAATTCTTAATTTTCCTTATACAGCAAGAAACATTGGATATGAGAATGGAAAATTCTTTGATAATAGCACTTCTTCTTCTTCAAACTCTCTTGCTTCTTGGAATTTCACTTGTGTGCCAACATCAACAACAAACACTTTTGCTACTACTACCGCTACTACTTCTTTTGTATTGGATAATTCCATTTCGAAAAAAGGATCGCATATATATAAAGGCTCCGATAGATCATTTCTCTATAGAATTTGTCCAAATCTTCCAAGCTACAAGAGAGTTATTTCAAATTCTTTTAGTTTTTTGAGTTCTGATGGCGATGGAAGAGCTAGGAATTCGGATGATTTCATGAGTAGTTTACGCGATAAATCATCGACGTTGATCACAAACTTAAAGTCTTCCAAGGAGAAAGAGTTGCAAGAAGATCATCTTGAAGCTGAACAGCATAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTTTCTTCATCATAA 897 0.3679 MDDSSSVAEESKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEDEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRTFQEVFSNSSILNFPYTARNIGYENGKFFDNSTSSSSNSLASWNFTCVPTSTTNTFATTTATTSFVLDNSISKKGSHIYKGSDRSFLYRICPNLPSYKRVISNSFSFLSSDGDGRARNSDDFMSSLRDKSSTLITNLKSSKEKELQEDHLEAEQHKEVPFIDFLGVGVSSS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02813 298 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa2g02813 298 SMART sant 67 115 IPR001005 -
Vifa2g02813 298 SMART sant 15 64 IPR001005 -
Vifa2g02813 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa2g02813 298 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Vifa2g02813 298 Gene3D - 16 67 - -
Vifa2g02813 298 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g02813 298 PANTHER MYB PROTEIN-RELATED 16 183 - -
Vifa2g02813 298 CDD SANT 70 110 IPR001005 -
Vifa2g02813 298 Gene3D - 70 130 - -
Vifa2g02813 298 FunFam MYB transcription factor 16 67 - -
Vifa2g02813 298 Pfam Myb-like DNA-binding domain 19 79 - -
Vifa2g02813 298 FunFam MYB transcription factor 69 138 - -
Vifa2g02813 298 CDD SANT 19 60 IPR001005 -
Vifa2g02813 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Vifa2g02813 298 SUPERFAMILY Homeodomain-like 15 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02813 Vifa-Chr2 784759559 784760706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02813 14 298 MYB Transcription Factor Family AT1G17950 42.612 2.96e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g02813 Myb_DNA-bind_6 8.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02813 K09422 - gmx:100817328 349.747