Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02796 ATGTCGAGTACTGCTGGTCAAGTCATCAAATGCAAAGCTGCGGTTGCATGGGAGGCTGGGAAGCCACTGGTGATTGAAGAAGTAGAGGTGGCGCCACCGCAGGCCGGTGAAGTTCGTCTCAAGATACTCTTCACCTCCCTTTGTCACACTGATGTTTACTTCTGGGAAGCTAAGGGTCAGACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGATTGTGGAGAGCGTAGGTGAAGGTGTGACTCATCTGAAACCAGGGGATAAAGCCCTGCCAGTATTCACAGGGGAGTGTGGTGATTGTCCACATTTGGTTCATGCTGGATGTGTTGCAAAGATCAACCCTGAAGCACCACTTGACAAAGTTTGTATTCTCAGTTGTGGAATATGCACAGGTCTTGGTGCTACTGTGAATGTTGCAAAACCAAAGCCAGGTTCTTCAGTTGCTATCTTTGGGCTTGGAGCTGTTGGCCTTGCTGCTGCTGAAGGTGCAAGGATCTCTGGTGCATCAAGAATCATTGGAGTTGATTTAGTTTCCAGCCGATTTGAATTAGCTAAGAAGTTTGGAGTGAATGAGTTCGTGAACCCGAAAGATCACGACAAACCTGTACAACAGGTAATTGCTGAAATGACAAATGGAGGTGTAGATCGCGCTGTTGAATGTACCGGCAGCTTCCAAGCTATGATCTCAGCATTTGAATGTGTACATGATGGTTGGGGTACTGCTGTACTTGTTGGAGTGCCAAACAAAGATGATGCATTCAAAACTCATCCTATGAATTTCTTGAATGAAAGGACTCTTAAGGGCACCTTCTATGGCAACTACAAGCCTCGCACTGATCTTCCTAATGTTGTAGAGAAGTACATGAAAGGAGAGCTGGAGCTAGAGAAGTTCATTACTCACACAGTACCATTCTCAGAGATCAACAAAGCTTTTGATTACATGCTCAAAGGGGAGTCTATTAGGTGTATCATCAGAATGGAGGAGTAA 996 0.4548 MSSTAGQVIKCKAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDKALPVFTGECGDCPHLVHAGCVAKINPEAPLDKVCILSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRAVECTGSFQAMISAFECVHDGWGTAVLVGVPNKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHTVPFSEINKAFDYMLKGESIRCIIRMEE 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02796 331 Gene3D - 134 272 - -
Vifa2g02796 331 SUPERFAMILY GroES-like 4 138 IPR011032 -
Vifa2g02796 331 PANTHER ALCOHOL DEHYDROGENASE 106 327 - -
Vifa2g02796 331 Pfam Alcohol dehydrogenase GroES-like domain 36 105 IPR013154 -
Vifa2g02796 331 Gene3D - 106 321 - -
Vifa2g02796 331 Gene3D - 6 105 - -
Vifa2g02796 331 Pfam Zinc-binding dehydrogenase 157 287 IPR013149 -
Vifa2g02796 331 CDD alcohol_DH_plants 9 328 - -
Vifa2g02796 331 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Vifa2g02796 331 SMART PKS_ER_names_mod 20 327 IPR020843 GO:0016491
Vifa2g02796 331 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 294 IPR036291 -
Vifa2g02796 331 FunFam Alcohol dehydrogenase class-P 134 272 - -
Vifa2g02796 331 SUPERFAMILY GroES-like 279 328 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02796 Vifa-Chr2 777351381 777353280 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02796 37 297 Monolignol Biosynthesis Gene Families AT4G37990 23.906 1.72e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02796 K18857 - gmx:100783858 619.387