Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02788 ATGAGAAAGTGTTGGATTGTTGGTGTACTGATTGTTTTGGGCACAACTATTGGGGTAGAAGGGTACCCTATTGAAGATTTGGTTGAGAGGTTACCAGGGCAACCTAAGGTTAACTTTAGACAATATGCTGGTTATGTTGATATTGATGTAAAGCATGGAAGGAGTCTCTTCTACTATTTTGTTGAGGCTGATCATCATCCTCACAAAAAGCCCCTCACTCTTTGGCTCAATGGAGGTCCGGGATGTTCCTCCATTGGAGGAGGTGCTTTTACTGAATTAGGACCGTTTTATCCTAAAAGTAATGGTCGTGGTCTACGAACAAATTCAAAGTCTTGGAATAAAGTTTCGAATCTTTTGTTTGTGGAATCTCCTGCCGGAGTTGGTTGGTCATATTCAAATACAACTTCTGATTATACCATCGGTGATGATGCTACAGCCAATGATATGGTTTCGTTCTTGCTGAAATGGTACGAGAAATTCCCTTCTTATCGACAGAGAAAGTTGTTTCTAACCGGAGAAAGCTATGCAGGACATTACATACCCCAGCTAGCTAATGCTATTCTTGATTATAATTCCCATCATTCAACTGGTTTCAAATTCAATATAAAAGGACTCGCGATTGGAAATCCACTTCTGAAATTGGATCGTGATGCACAAGCAACATATGAATATTTCTGGTCACACGGAATGATTTCAGATGAAATTGGTCTTGCTCTTACTCATGAATGTGATTTTGATGATTATACTTATGAAAATCCTCATAATTTATCCAAATCATGCAATAAAGCTATAATTGATGCTAATAAAATTGTGGGCGAGTATATAAACATCTATGATGTGATTCTTGATGTTTGTTATCCATCCATTCTTCAACAAGAACTTAAACTGAAAAAGATGGCTACTAAAATAAATTTAGGTGTAGATGTTTGTTTGAGCTATGAAAATGATTTTTACCTTAATCTCCCTCAAGTTCAAAAGGCTCTTCATGCTAATCGTACCAGTTTACCATATTCATGGTCCATGTGCAGTGATTTTTTAAATTATAGTCTATCAGATCCTAATATTGACATGCTTCCAAGTTTGAAACGGATAGTTCAAAACCATATTCCAATATGGATTTACAGTGGAGACCAAGATTCAGTTGTGCCATTACTAGGTACTCGAACACTCATTCGTGAACTAGCTCATGACCTAAAATTCAAGATTACTGATCCATATAGAGTTTGGTTTCACAAAGGACAGGTTGGAGGTTGGGTAACTGAATATGGAAAATTGTTAACTTTTGCCACTGTAAGAGGGGCTGGACACATGGTACCATATGGACAACCTTCAAGAGCATTGCATCTATTTCAATCCTTTTTGAGTGGGAGGAGATTGCCAAACACTACTCGACCTTCAATTTGA 1404 0.3746 MRKCWIVGVLIVLGTTIGVEGYPIEDLVERLPGQPKVNFRQYAGYVDIDVKHGRSLFYYFVEADHHPHKKPLTLWLNGGPGCSSIGGGAFTELGPFYPKSNGRGLRTNSKSWNKVSNLLFVESPAGVGWSYSNTTSDYTIGDDATANDMVSFLLKWYEKFPSYRQRKLFLTGESYAGHYIPQLANAILDYNSHHSTGFKFNIKGLAIGNPLLKLDRDAQATYEYFWSHGMISDEIGLALTHECDFDDYTYENPHNLSKSCNKAIIDANKIVGEYINIYDVILDVCYPSILQQELKLKKMATKINLGVDVCLSYENDFYLNLPQVQKALHANRTSLPYSWSMCSDFLNYSLSDPNIDMLPSLKRIVQNHIPIWIYSGDQDSVVPLLGTRTLIRELAHDLKFKITDPYRVWFHKGQVGGWVTEYGKLLTFATVRGAGHMVPYGQPSRALHLFQSFLSGRRLPNTTRPSI 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02788 467 ProSitePatterns Serine carboxypeptidases, histidine active site. 426 443 IPR033124 GO:0004185
Vifa2g02788 467 SUPERFAMILY alpha/beta-Hydrolases 29 459 IPR029058 -
Vifa2g02788 467 Gene3D - 357 456 - -
Vifa2g02788 467 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 27 443 IPR001563 GO:0004185|GO:0006508
Vifa2g02788 467 FunFam Carboxypeptidase 22 287 - -
Vifa2g02788 467 Gene3D alpha/beta hydrolase 24 286 IPR029058 -
Vifa2g02788 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 426 439 IPR001563 GO:0004185|GO:0006508
Vifa2g02788 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 156 181 IPR001563 GO:0004185|GO:0006508
Vifa2g02788 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Vifa2g02788 467 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Vifa2g02788 467 Pfam Serine carboxypeptidase 32 456 IPR001563 GO:0004185|GO:0006508
Vifa2g02788 467 Gene3D - 310 346 - -
Vifa2g02788 467 ProSitePatterns Serine carboxypeptidases, serine active site. 170 177 IPR018202 GO:0004185
Vifa2g02788 467 FunFam Carboxypeptidase 357 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02788 Vifa-Chr2 775447664 775449872 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02788 317 459 Calmodulin-binding Proteins AT2G22960 30.822 2.23e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02788 K16297 - gmx:100803335 804.668