Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02777 ATGTTGAACAATGCATTAAATTTTCTTATCTTGTTTCTAGCTGTCTCATTGTTTCCATTTGTTTCTTCTCTTAACCAAGAAGGTCTCGCTTTACTTTCATGGCTTTCGACTTTCAATTCTTCGAACTCGGAGACTAGTAGTACTACTTTCTCGTCATGGGATCCTGCTCACAAAAATCCTTGCAGATGGGACTATATAAAATGTTCTGCAGAAGAGTTCGTTGAAGAGATCGTGATAACATCTATCGATCTTCGTAGCGAATTCCCTACAATGTTTCTTTCTTTTAACCACCTTAAAACTCTTGTCATCTCGAATGGAAATCTGACTGGTGAGATTCCGAGTTCTGTTGGAAACTTGTCGTCGTCGTCACTGGTAACTCTTGATCTTAGTTTCAATAGTTTAACAGGAAAAATACCGGAAGAGATAGGAAAGTTATCTGAACTGAGATGGTTATCGTTGAATTCGAATTCGTTACGTGGTGGAATTCCAACCACGATTGGTAACTGTTCAAAGCTTCAGCACTTGGAACTGTTTGACAACCAGCTTTCTGGTATGATTCCTGGAGAAATAGGACAGTTGAAGGCTCTTGAGTCGCTACGAGCCGGTGGAAACCAAGGTATTTTCGGCGAAATTCCAATGCAGATATCAGATTGTAAGGCTTTAGTTTTTCTGGGACTTGCTGTTACTGGAATTTCGGGTGAGATTCCGGCAAGTATAGGAGAGCTTCAAAATCTCAAGACACTTTCAGTCTACACAGCACATCTCACAGGTGAAATTCCACCAGAGATTCGAAACTGTTCAGCTTTGGAAGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAAAATTCCTTACGAATTCGGCTCCATGCAAAGCCTTAAGAGGGTATTGCTATGGAAGAACAATTTAACTGGAATAATTCCGGAAAGCCTCGGAAACTGTACTAGTCTGAAGGTTATTGATTTCTCTTTGAATTCTCTGATTGGTAAGTTACCTTTGAGTCTAAGTAATTTACTCTCATTGGAGGAATTTCTTTTGTCTGATAATAACATTTACGGCGAAATACCTTCATATGTTGGCAATTTTTCCATGCTGAAGCAACTTGAGTTCGATAATAACCGATTCTCTGGCGAGATTCCGTCTGTTATGGGAAACTTGAAGGAACTCACACTCTTCTATGCATGGCAGAATCAGCTTAATGGAAATATACCAACAGAATTATCTAACTGTGAGAAACTCGAAGCAGTTGATCTTTCACACAATTTCCTAACCGGTCCAATTCCGAATTCCCTCTTTCATCTGCAGAATTTAACTCAGTTGTTGCTGATATCAAACAGTCTTTCAGGTCGAATTCCGCCTGATATCGGGCGGTGCACAAGCTTGATCAGGTTAAGACTTGGATCAAACAATTTTACAGGTCAAATTCCGCGAGAGATAGGCCTTTTGAAAAGTTTAACATTTCTGGAGCTCTCAGATAATCAACTCAGTGGAGACATTCCCTATGAGATAGGTAAGTGTGCTCATTTAGAAATGCTTGACTTGCACAAAAATCAGCTTCAAGGAACCATTCCTTCATCACTAAAATTCTTAGTCGATCTCAACGTCTTGGATCTTTCTTCAAACCGAATCACTGGAAGCATTCCCAAGAGCTTCGGCAAGCTTACTTCGTTAAATAAGTTGATTCTAAGTGGAAACCTTATCGCCTGTTCGATCCCTCAGTCCCTAGGACTTTGTAAGGATTTGCAGTTGCTTGACTTAAGTAACAATAAGATCATAGGTTCAATTCCGAACGAGATTGGTTACTTGCAAGGATTGGATATACTCTTGAACTTGAGTTGGAATTCTCTTACTGGTTCAATTCCAAAGACTTTTTCGAATCTCTCCAAACTTTCAATCTTAGACCTATCTTACAACAAGATCACAGGTACTCTTATAGTACTTGCTAACCTTGATAATCTTGTGTCTCTAAATGTTTCCTACAATAGATTTTCCGGCACTCTTCCCGACACGAAGTTCTTCCAAGATTTACCTTCTGCTGCGTTTGCCGGTAACCCTCATCTTTGCATTAACAGCAAGTGTCGTGCAAGCGGAAGTCTCGAAGGAAACAAATCGATAAGAAATATTATAATCTACACTTTCCTTGGTGTTATTTTAACTTCTGCTATTGTCACTTGTGGAGTTATTTTAGCACTAAGGATTCATGGGGACAGTTTTTATGGGAGAAATAATCTTGATCAAGTTGAAATGGAATGGTCTTTCACTCCATTCCAGAAGCTTAACTTCAACATCAACGATGTGGTCACGAAGTTGTCGGATTCAAATATTGTCGGAAAGGGTTGTTCGGGCGTTGTTTACCGTGTAGAGACTCCGACGAAACAGATTATTGCAGTGAAGAAGCTATGGCCAATAAAGAATGAAGAGCCACCGGAGAGAGATTTCTTTACAGCAGAAGTTCAGACGCTTGGATCGATAAGGCATAAAAATATAGTAAGACTTTTAGGATGCTGCAACAATGGAAGAACTAGATTGCTGTTGTTTGATTACATATGTAATGGAAGTTTGTTTGGATTGCTCCATGAAAAGAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTTGGAACAGCTCATGGTTTGGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCATCGCGATGTTAAGGCTAACAACATCTTGGTAGGTCCACACTTTGAAGCTTTTCTTGCAGATTTCGGCCTTGCGAAATTGGTCATTTCCTCAGACTGTTCAAGAGCCTCACATGTAGTTGCAGGTTCTTACGGATACATAGCTCCTGAATATGGATACAGTTCAAGGATCACAGAAAAGAGCGACGTGTACAGTTACGGTGTCGTGCTTCTCGAGATGTTAACTGGAATGGAACCAACAGACAACAGGATTCCGGAGAATGCTCACATTGTAACATGGGTTATCAGTGAAATCAGAGTGAAGAAAAGAGAATTCACATCTATTCTTGATCAGCAATTACTATTGCAATGTGGAACAAGAACACCAGAGATGCTTCAAGTGTTAGGTGTGGCTCTTCTCTGTGTGAATCCATCACCAGAAGAAAGACCTACAATGAAAGATGTGACAGCAATGCTCAAAGAGATTAGCCATGAAAATGATGATTTGGATAAACCAAATCTTCTGCATAATAAAGGCATGGTTACCAATCCAAAAGCAGCAGTTCATTGTTCTAGTTTCTCAAGATCATGTGAACTTCTGATAGAATCATCATCTTCTTCTTTATAG 3285 0.3963 MLNNALNFLILFLAVSLFPFVSSLNQEGLALLSWLSTFNSSNSETSSTTFSSWDPAHKNPCRWDYIKCSAEEFVEEIVITSIDLRSEFPTMFLSFNHLKTLVISNGNLTGEIPSSVGNLSSSSLVTLDLSFNSLTGKIPEEIGKLSELRWLSLNSNSLRGGIPTTIGNCSKLQHLELFDNQLSGMIPGEIGQLKALESLRAGGNQGIFGEIPMQISDCKALVFLGLAVTGISGEIPASIGELQNLKTLSVYTAHLTGEIPPEIRNCSALEDLFLYENQLSGKIPYEFGSMQSLKRVLLWKNNLTGIIPESLGNCTSLKVIDFSLNSLIGKLPLSLSNLLSLEEFLLSDNNIYGEIPSYVGNFSMLKQLEFDNNRFSGEIPSVMGNLKELTLFYAWQNQLNGNIPTELSNCEKLEAVDLSHNFLTGPIPNSLFHLQNLTQLLLISNSLSGRIPPDIGRCTSLIRLRLGSNNFTGQIPREIGLLKSLTFLELSDNQLSGDIPYEIGKCAHLEMLDLHKNQLQGTIPSSLKFLVDLNVLDLSSNRITGSIPKSFGKLTSLNKLILSGNLIACSIPQSLGLCKDLQLLDLSNNKIIGSIPNEIGYLQGLDILLNLSWNSLTGSIPKTFSNLSKLSILDLSYNKITGTLIVLANLDNLVSLNVSYNRFSGTLPDTKFFQDLPSAAFAGNPHLCINSKCRASGSLEGNKSIRNIIIYTFLGVILTSAIVTCGVILALRIHGDSFYGRNNLDQVEMEWSFTPFQKLNFNINDVVTKLSDSNIVGKGCSGVVYRVETPTKQIIAVKKLWPIKNEEPPERDFFTAEVQTLGSIRHKNIVRLLGCCNNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGTAHGLEYLHHDCIPPIVHRDVKANNILVGPHFEAFLADFGLAKLVISSDCSRASHVVAGSYGYIAPEYGYSSRITEKSDVYSYGVVLLEMLTGMEPTDNRIPENAHIVTWVISEIRVKKREFTSILDQQLLLQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEISHENDDLDKPNLLHNKGMVTNPKAAVHCSSFSRSCELLIESSSSSL 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02777 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 205 330 - -
Vifa2g02777 1094 SMART LRR_typ_2 145 169 IPR003591 -
Vifa2g02777 1094 SMART LRR_typ_2 290 313 IPR003591 -
Vifa2g02777 1094 SMART LRR_typ_2 482 506 IPR003591 -
Vifa2g02777 1094 SMART LRR_typ_2 554 578 IPR003591 -
Vifa2g02777 1094 SMART LRR_typ_2 650 683 IPR003591 -
Vifa2g02777 1094 SMART LRR_typ_2 434 458 IPR003591 -
Vifa2g02777 1094 SMART LRR_typ_2 338 362 IPR003591 -
Vifa2g02777 1094 SMART LRR_typ_2 530 553 IPR003591 -
Vifa2g02777 1094 SMART LRR_typ_2 602 626 IPR003591 -
Vifa2g02777 1094 ProSitePatterns Protein kinases ATP-binding region signature. 776 804 IPR017441 GO:0005524
Vifa2g02777 1094 SUPERFAMILY Protein kinase-like (PK-like) 767 1062 IPR011009 -
Vifa2g02777 1094 SMART serkin_6 770 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02777 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 412 697 - -
Vifa2g02777 1094 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515
Vifa2g02777 1094 Pfam Leucine Rich Repeat 412 434 IPR001611 GO:0005515
Vifa2g02777 1094 ProSiteProfiles Protein kinase domain profile. 770 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02777 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 204 - -
Vifa2g02777 1094 ProSiteProfiles Leucine-rich repeat profile. 629 651 IPR001611 GO:0005515
Vifa2g02777 1094 SUPERFAMILY RNI-like 331 668 - -
Vifa2g02777 1094 ProSiteProfiles Leucine-rich repeat profile. 580 602 IPR001611 GO:0005515
Vifa2g02777 1094 SUPERFAMILY L domain-like 65 399 - -
Vifa2g02777 1094 Pfam Leucine rich repeat 508 567 IPR001611 GO:0005515
Vifa2g02777 1094 Pfam Leucine rich repeat 609 663 IPR001611 GO:0005515
Vifa2g02777 1094 SMART LRR_sd22_2 627 652 - -
Vifa2g02777 1094 SMART LRR_sd22_2 145 171 - -
Vifa2g02777 1094 SMART LRR_sd22_2 530 551 - -
Vifa2g02777 1094 SMART LRR_sd22_2 121 144 - -
Vifa2g02777 1094 SMART LRR_sd22_2 482 514 - -
Vifa2g02777 1094 SMART LRR_sd22_2 386 412 - -
Vifa2g02777 1094 SMART LRR_sd22_2 578 597 - -
Vifa2g02777 1094 Gene3D Ribonuclease Inhibitor 410 696 IPR032675 -
Vifa2g02777 1094 Gene3D Ribonuclease Inhibitor 230 409 IPR032675 -
Vifa2g02777 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 849 1063 - -
Vifa2g02777 1094 Gene3D Phosphorylase Kinase; domain 1 741 848 - -
Vifa2g02777 1094 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 746 848 - -
Vifa2g02777 1094 Pfam Leucine rich repeat N-terminal domain 25 69 IPR013210 -
Vifa2g02777 1094 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 288 1047 - -
Vifa2g02777 1094 Gene3D Transferase(Phosphotransferase) domain 1 849 1066 - -
Vifa2g02777 1094 PRINTS Leucine-rich repeat signature 627 640 - -
Vifa2g02777 1094 PRINTS Leucine-rich repeat signature 533 546 - -
Vifa2g02777 1094 Pfam Protein kinase domain 773 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02777 1094 Gene3D Ribonuclease Inhibitor 24 226 IPR032675 -
Vifa2g02777 1094 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02777 Vifa-Chr2 771137364 771140995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02777 23 1084 Receptor kinase-like Gene Family AT5G56040 46.182 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa2g02777 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02777 - - gmx:100807225 1696.4