Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02775 ATGGCTAGAGGATTGAAGAAACACTTGAAGAGACCGAATGCTCCAAAACATTGGATGCTTGACAAATTTGGTGGAGCTTTTTCACCAAAGCTATCATCTGGACCCCACAAGTCAAGGGAGTTCTTGCCTTTGATTCTCATCCTGAGAAACAGACTAAAATATGCTCTAACGTACAGAGAAGTTATTGCCATTTTGATGCAGCGCCATGTTCTTGTTGATAGCAAGGTTAGGACAGACAAGACATATCCTACTGGTTTCATGGATGTTGTTTCTATTCCCAAAACAAATGAAAATTTCCGTCTTTTGTATGACACCAAGGGCCGTTTCCGTCTCCACTCTGTGAGAGACGATGAAGCAAAGTTTAAGCTCTGCAAGGTTCGATCTGTTCAATTCGGACAGAAGGGTATTCCCTATCTTAACACCTACGATGGTCGTACCATCCGCTATCCGGATCCACTAATTAAGGCCAATGACACCATCAAACTTGACCTTGAAAACAACAAGATCACTGATTTTATCATGTTTGATGTGGGGAATGTTGTCATGGTTACCGGAGGAAGAAACAGAGGCTGA 573 0.4241 MARGLKKHLKRPNAPKHWMLDKFGGAFSPKLSSGPHKSREFLPLILILRNRLKYALTYREVIAILMQRHVLVDSKVRTDKTYPTGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKITDFIMFDVGNVVMVTGGRNRG 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02775 190 CDD S4 51 112 - -
Vifa2g02775 190 FunFam 40S ribosomal protein S4 1 117 - -
Vifa2g02775 190 FunFam 40S ribosomal protein S4 122 172 - -
Vifa2g02775 190 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Vifa2g02775 190 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 190 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vifa2g02775 190 Pfam Ribosomal family S4e 95 169 IPR013845 -
Vifa2g02775 190 Gene3D - 122 172 IPR038237 -
Vifa2g02775 190 SMART s4_6 42 106 IPR002942 GO:0003723
Vifa2g02775 190 Gene3D - 1 117 IPR036986 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02775 Vifa-Chr2 770764771 770765343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02775 1 190 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 88.947 2.53e-127 357