Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02774 ATGGCTAGAGGATTGAAGAAACACTTGAAGAGACCGAATGCTCCAAAACATTGGATGCTTGACAAATTTGGTGGAGCTTTTGCACCAAAGCCATCATCTGGACCCCACAAGTCAAGGGAGTGCTTGCCTTTGATTCTCATCCTGAGAAACAGACTAAAATATGCTCTAACGTACAGAGAAGTTATTGCCATTTTGATGCAGCGCCATGTTCTTGTTGATAGCAAGGTTAGGACAGATAAGACATATCCTGCTGGTTTCATGGATGTTGTTTCTATTCCCAAAACAAATGAAAATTTCCGTCTTTTGTATGACACCAAGGGCCGTTTCCGTCTCCACTCTGTGAGAGACGATGAAGCAAAGTTTAAGCTCTACAAGGTTCGATCTGTTCAATTCGGACAGAAAGGTATTCCCTATCTTAACACCTACGATGGTCGTACCATCCGCTATCCGGATCCACTAATTAAGGCCAATGACACCATCAAACTTGACCTTGAAAACAACAAGATCACTGATTTTATCAAGTTTGATGTGGGGAATGTTGTCATGGTTACCGGAGGAATAAACAGAGGCCGAGTTGGTGTCATCAAGAACAGAGAAATGGCACCAAAAGGAGAGAAGAAGCCCGCGGAGAAGAAACCCGCAGAGGAGAAGAAGTCCACAGTAGCCGAGAAAACTCCCGCCGAGAAGAAACCCAAGGAAGGAAAGAAGCTACCATCCAAAGATGGTGCCGCCGCTGGAAACAAGAAGAGCGTGGAAACCTACAAGATCTACGTCTTCAAGGTATAA 786 0.4453 MARGLKKHLKRPNAPKHWMLDKFGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDSKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLYKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLENNKITDFIKFDVGNVVMVTGGINRGRVGVIKNREMAPKGEKKPAEKKPAEEKKSTVAEKTPAEKKPKEGKKLPSKDGAAAGNKKSVETYKIYVFKV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02774 261 MobiDBLite consensus disorder prediction 198 239 - -
Vifa2g02774 261 CDD S4 51 112 - -
Vifa2g02774 261 FunFam 40S ribosomal protein S4 1 117 - -
Vifa2g02774 261 MobiDBLite consensus disorder prediction 198 247 - -
Vifa2g02774 261 ProSiteProfiles S4 RNA-binding domain profile. 42 104 - -
Vifa2g02774 261 Pfam S4 domain 47 90 IPR002942 GO:0003723
Vifa2g02774 261 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Vifa2g02774 261 Gene3D - 175 223 IPR014722 -
Vifa2g02774 261 Hamap 30S ribosomal protein S4e [rps4e]. 7 237 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vifa2g02774 261 Gene3D - 1 117 IPR036986 GO:0003723
Vifa2g02774 261 Gene3D - 122 172 IPR038237 -
Vifa2g02774 261 Pfam Ribosomal family S4e 95 169 IPR013845 -
Vifa2g02774 261 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 199 IPR000876 GO:0003735|GO:0005840|GO:0006412
Vifa2g02774 261 SMART s4_6 42 106 IPR002942 GO:0003723
Vifa2g02774 261 FunFam 40S ribosomal protein S4 122 172 - -
Vifa2g02774 261 CDD KOW_RPS4 175 199 IPR041982 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02774 Vifa-Chr2 770755040 770755825 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02774 1 199 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 90.955 3.22e-136 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02774 K02987 - rcu:8276853 388.267