Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02773 ATGTTCCAACAAAGACATAACAATATTACTACTAGCGAGCTAGATCAAATGTTGCATATGCTATCTTCTTCTTCTTTTTCCAATCCCATGCCATTCTCAACAACCTCAATGGACCAATCAAATTCAAAATGGAAACCACATGTTGAAATTGCTCCCAATTGTCCTCGTTGCGCTTCAACAAACACCAAATTCTGTTACTACAACAATTACAGCCTCTCCCAGCCGCGGTATTTTTGTAAAGGCTGTAGGCGTTATTGGACTAAAGGTGGCTCTCTTCGAAATGTCCCTGTTGGAGGCGGCTGTCGCAAAAATCGTCGTGGAAAGGTGGTCAGAAATTTGCATACTGATCACCTTTCCACAGACGGTTCTGACTCTGTTGATGGTGATCAACGGAGTCAAAATAGTGTTTCACGCGATATAGATATGGCAGTTGTTTTCGCCAAATTCTTAAACCAAAACACAAGTAGTACACATCATGGTGATCATGAGGAAATAGAAACTGAGAGTGAGGCTAACAATAACAATGGATCATGTTCTTCCAATATGAACAATTTGTCAACACCGGACAGCGTTGAAACTGAGAATGATGCAGTGATCCATCCTGATGCAGTGGTTGTAAATGGGGATCCTTTTGATCAGGAAATGAGTTTGAGCGAGTTTGAGGGGTTTCTGGGTGTTGATGAAGACGTGGTTCAAGATGTTCTATGGCCTGATTCTTCTGATGCTATGATGGTGTCAATGTCAACATGGCAACAACAACCACCATCCATGATGCAAATGGAGGTGGATTACTCCATGCCATTGCCATTGCCATTGCCATTGAATGAGGGTGATAATCATGATGAATTATTATTACCTGTTACTATTAATTCAAATTCTGCTAGTGTCAATTTGATTAATGAGAGTTGGAGCAATTCTTGGGATTCTTTTGATCTTTCAACTATGGAAGTTTTCTCATCGAGCTCAAGACCTTAA 975 0.4062 MFQQRHNNITTSELDQMLHMLSSSSFSNPMPFSTTSMDQSNSKWKPHVEIAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKVVRNLHTDHLSTDGSDSVDGDQRSQNSVSRDIDMAVVFAKFLNQNTSSTHHGDHEEIETESEANNNNGSCSSNMNNLSTPDSVETENDAVIHPDAVVVNGDPFDQEMSLSEFEGFLGVDEDVVQDVLWPDSSDAMMVSMSTWQQQPPSMMQMEVDYSMPLPLPLPLNEGDNHDELLLPVTINSNSASVNLINESWSNSWDSFDLSTMEVFSSSSRP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02773 324 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Vifa2g02773 324 MobiDBLite consensus disorder prediction 154 192 - -
Vifa2g02773 324 MobiDBLite consensus disorder prediction 170 192 - -
Vifa2g02773 324 Pfam Dof domain, zinc finger 52 106 IPR003851 GO:0003677|GO:0006355
Vifa2g02773 324 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Vifa2g02773 324 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 189 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02773 Vifa-Chr2 770660849 770661823 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02773 18 151 C2C2-Dof Transcription Factor Family AT3G52440 51.049 1.29e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa2g02773 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02773 - - mtr:11416134 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02773 2 770660849 770661823 Vifa2g02773 2 770660849 770661823 ECH