Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02767 ATGGTGTACTGTGATCACTGTGTGAGAAACGTTAATGGACTGCGAATCGACGATAGTGTCTTATGTTGTGAGGACTGTGGGAAGGTGTTGGAAGATTACTATTTTTCTCAGGAGGCAACTTTTGTGAAAACTGCTGGTGGAAAGAGCCAATTATCAGGCAATTATGTAATGGGGGTTCGCGTTGGAATCTCCGACTCACGTGCAAGGACTTTAGATAGAGCTAGAGATTTTATGGCAAATCTAAGTGTCGGCCTTGGAGTGGAAGATAATAGTATAGTTGAGGAAGCTTTGGCCTTTTATACAATAGCACTAGAGAAAAATTTTACAAAGGGACGGAGATCAGAACAAGTACAAGCTTCTTGCCTCTATCTTGCATACCGGGATAAAAATAAGCCATACCTTCTTATTGATTTTTCAAATTCTTTAAGGACAAATGTTTATGTGCTCGGCGCAGTTTTTTTGCAGCTTTGTAAAGTGCTAAGGCTTGAAAATCACCCGATTGTTCAAAAGCTTGTTGATCCCAGTCTTTTTATTTACAAATTTACAAATAATTTGTTAAAGCAAAGGAATGTGGCTGTCTCGGAAACTGCACTGAATATTATTGCCAGCATGAAACGTGACTGGATGCAGGGAGGAAGCCTAGCGGATTATGTGTCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACCAAGCGGCTGGTAGAGTTTGAGAATACAGAATCCTCCAGTCTGACAATTGATGAGTTGAATGCAATGGCAAAAGAGCATGAAAAAACTCCAATTAAAATACCAAATGGTGAACGAAACAAATGTACTTCAGAGGATCAAGAACTACTGTGTGAACACAAGGGTAGTGGAATGCCCTATTTTGCACTTGGATTATGTGAAGCATGTTACAGGGAGTTTGATACACTCTCTGGTGGACTTGATGGTGGTTTAGATCCTCCTGCTTTCCAGCGTGCTGAGAGGGATAGAATGATAAAGTCACATTCTGAGGAGAATGCTAATAAATTGGAAGATTTGGCAAAGGTTTCAAATGGTGCATACGAGAGCCAACTAGAGTTACCTGCTGCCTCTGAGCCTAAAAGTATTATTGGGGGTGATGAAGAATATATGGCCACTAAGGATGTTGAGCATGATAAGTCACATATAGAAGGTGATATGAATACAAAAACTCAAGATGAATCAGAAAGTCTCTCTGATATTGATGATCAGGAGGTTGATGGCTACCTTCACAATGAGGAGGAAAAGCGTTACAAAAAAGAGATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTATCAAGGAAGCAGCTGTAGCAGCTGAAATGAAAAAATTAGAGGAAGAATTAAAAAATTGTTCTCCTGAATCTCGTGCAGCAAGAGAGCTTGCTGCATCTGCTGCTGAAGCTGTGGCAAAAGCTAGAAAGGAAATGAGGCAGAAACGAGCTCAAGAGGCAAAAAGTTTGGGTCCTGCTAAATCTGCTGTAGAGGCAACGACCCGAATGTTGCAAACAAAGAAACTCAGCTCCAAAGTCAATCATGATTCCTTGAAGAAATTATTTGATGAACCTGCATCTCCACAAAATCGCAAGAAAGTACGATTTGAGTTGCCCTCAAAGGATGATGATAATTTGGAATTGAAGTCAGACCACAAAACAAAGAAGGATGATTATGAATCGGTCGACGAATACGTGGAGAATGATGATATGAATGGAGAATACAATGATTATGATGAGACATACTATGGGGACGATGCATATGATGGTTTTTGA 1791 0.3992 MVYCDHCVRNVNGLRIDDSVLCCEDCGKVLEDYYFSQEATFVKTAGGKSQLSGNYVMGVRVGISDSRARTLDRARDFMANLSVGLGVEDNSIVEEALAFYTIALEKNFTKGRRSEQVQASCLYLAYRDKNKPYLLIDFSNSLRTNVYVLGAVFLQLCKVLRLENHPIVQKLVDPSLFIYKFTNNLLKQRNVAVSETALNIIASMKRDWMQGGSLADYVSDILRIVHVCEATLTKRLVEFENTESSSLTIDELNAMAKEHEKTPIKIPNGERNKCTSEDQELLCEHKGSGMPYFALGLCEACYREFDTLSGGLDGGLDPPAFQRAERDRMIKSHSEENANKLEDLAKVSNGAYESQLELPAASEPKSIIGGDEEYMATKDVEHDKSHIEGDMNTKTQDESESLSDIDDQEVDGYLHNEEEKRYKKEIWEFNNREYLEEQAIKEAAVAAEMKKLEEELKNCSPESRAARELAASAAEAVAKARKEMRQKRAQEAKSLGPAKSAVEATTRMLQTKKLSSKVNHDSLKKLFDEPASPQNRKKVRFELPSKDDDNLELKSDHKTKKDDYESVDEYVENDDMNGEYNDYDETYYGDDAYDGF 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02767 596 Coils Coil 435 455 - -
Vifa2g02767 596 MobiDBLite consensus disorder prediction 384 401 - -
Vifa2g02767 596 Pfam Brf1-like TBP-binding domain 403 528 IPR011665 -
Vifa2g02767 596 MobiDBLite consensus disorder prediction 568 584 - -
Vifa2g02767 596 Gene3D - 62 165 - -
Vifa2g02767 596 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Vifa2g02767 596 Coils Coil 470 490 - -
Vifa2g02767 596 MobiDBLite consensus disorder prediction 384 403 - -
Vifa2g02767 596 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Vifa2g02767 596 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 518 IPR000812 GO:0006352|GO:0070897
Vifa2g02767 596 MobiDBLite consensus disorder prediction 517 567 - -
Vifa2g02767 596 Gene3D Single helix bin 381 444 - -
Vifa2g02767 596 SUPERFAMILY Cyclin-like 74 164 IPR036915 -
Vifa2g02767 596 MobiDBLite consensus disorder prediction 480 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02767 Vifa-Chr2 767360274 767381405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02767 1 512 Inorganic Solute Cotransporters AT2G01280 40.149 5.52e-95 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02767 K15196 - gmx:100817609 600.512