Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02766 ATGGTGTACTGTGATCACTGTGTGAGAAACGTTAATGGACTGCGAATCGACGATAGTGTCTTATGTTGTGAGGACTGTGGGAAGGTGTTGGAAGATTACTATTTTTCTCAGGAGGCAACTTTTGTGAAAACTGCTGGTGGAAAGAGCCAATTATCAGGCAATTATGTAATGGGGGTTCGCGTTGGAATCTCCGACTCACGTGCAAGGACTTTAGATAGAGCTAGAGATTTTATGGCAAATCTAAGTGTCGGCCTTGGAGTGGAAGATAATAGTATAGTTGAGGAAGCTTTGGCCTTTTATACAATAGCACTAGAGAAAAATTTTACAAAGGGACGGAGATCAGAACAAGTACAAGCTTCTTGCCTCTATCTTGCATACCGGGATAAAAATAAGCCATACCTTCTTATTGATTTTTCAAATTCTTTAAGGACAAATGTTTATGTGCTCGGCGCAGTTTTTTTGCAGCTTTGTAAAGTGCTAAGGCTTGAAAATCACCCGATTGTTCAAAAGCTTGTTGATCCCAGTCTTTTTATTTACAAATTTACAAATAATTTGTTAAAGCAAAGGAATGTGGCTGTCTCGGAAACTGCACTGAATATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGTGGTGCAGCATTATACATGTCTGCTCTTGCACATGGTTTTACATGCTCTAAGTCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACCAAGCGGCTGGTAGAGTTTGAGAATACAGAATCCTCCAGTCTGACAATTGATGAGTTGAATGCAATGGCAAAAGAGCATGAAAAAACTCCAATTAAAATACCAAATGGTGAACGAAACAAATGTACTTCAGAGGATCAAGAACTACTGTGTGAACACAAGGGTAGTGGAATGCCCTATTTTGCACTTGGATTATGTGAAGCATGTTACAGGGAGTTTGATACACTCTCTGGTGGACTTGATGGTGGTTTAGATCCTCCTGCTTTCCAGCGTGCTGAGAGGGATAGAATGATAAAGTCACATTCTGAGGAGAATGCTAATAAATTGGAAGATTTGGCAAAGGTTTCAAATGGTGCATACGAGAGCCAACTAGAGTTACCTGCTGCCTCTGAGCCTAAAAGTATTATTGGGGGTGATGAAGAATATATGGCCACTAAGGATGTTGAGCATGATAAGTCACATATAGAAGGTGATATGAATACAAAAACTCAAGATGAATCAGAAAGTCTCTCTGATATTGATGATCAGGAGGTTGATGGCTACCTTCACAATGAGGAGGAAAAGCGTTACAAAAAAGAGATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTATCAAGGAAGCAGCTGTAGCAGCTGAAATGAAAAAATTAGAGGAAGAATTAAAAAATTGTTCTCCTGAATCTCGTGCAGCAAGAGAGCTTGCTGCATCTGCTGCTGAAGCTGTGGCAAAAGCTAGAAAGGAAATGAGGCAGAAACGAGCTCAAGAGGCAAAAAGTTTGGGTCCTGCTAAATCTGCTGTAGAGGCAACGACCCGAATGTTGCAAACAAAGAAACTCAGCTCCAAAGTCAATCATGATTCCTTGAAGAAATTATTTGATGAACCTGCATCTCCACAAAATCGCAAGAAAGTACGATTTGAGTTGCCCTCAAAGGATGATGATAATTTGGAATTGAAGTCAGACCACAAAACAAAGAAGGATGATTATGAATCGGTCGACGAATACGTGGAGAATGATGATATGAATGGAGAATACAATGATTATGATGAGACATACTATGGGGACGATGCATATGATGGTTTTTGA 1845 0.4 MVYCDHCVRNVNGLRIDDSVLCCEDCGKVLEDYYFSQEATFVKTAGGKSQLSGNYVMGVRVGISDSRARTLDRARDFMANLSVGLGVEDNSIVEEALAFYTIALEKNFTKGRRSEQVQASCLYLAYRDKNKPYLLIDFSNSLRTNVYVLGAVFLQLCKVLRLENHPIVQKLVDPSLFIYKFTNNLLKQRNVAVSETALNIIASMKRDWMQTGRKPSGLCGAALYMSALAHGFTCSKSDILRIVHVCEATLTKRLVEFENTESSSLTIDELNAMAKEHEKTPIKIPNGERNKCTSEDQELLCEHKGSGMPYFALGLCEACYREFDTLSGGLDGGLDPPAFQRAERDRMIKSHSEENANKLEDLAKVSNGAYESQLELPAASEPKSIIGGDEEYMATKDVEHDKSHIEGDMNTKTQDESESLSDIDDQEVDGYLHNEEEKRYKKEIWEFNNREYLEEQAIKEAAVAAEMKKLEEELKNCSPESRAARELAASAAEAVAKARKEMRQKRAQEAKSLGPAKSAVEATTRMLQTKKLSSKVNHDSLKKLFDEPASPQNRKKVRFELPSKDDDNLELKSDHKTKKDDYESVDEYVENDDMNGEYNDYDETYYGDDAYDGF 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02766 614 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 536 IPR000812 GO:0006352|GO:0070897
Vifa2g02766 614 SUPERFAMILY Cyclin-like 74 164 IPR036915 -
Vifa2g02766 614 MobiDBLite consensus disorder prediction 498 614 - -
Vifa2g02766 614 SUPERFAMILY Cyclin-like 171 262 IPR036915 -
Vifa2g02766 614 MobiDBLite consensus disorder prediction 535 585 - -
Vifa2g02766 614 FunFam Transcription factor IIIB subunit 173 262 - -
Vifa2g02766 614 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Vifa2g02766 614 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Vifa2g02766 614 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Vifa2g02766 614 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Vifa2g02766 614 MobiDBLite consensus disorder prediction 586 614 - -
Vifa2g02766 614 Coils Coil 453 473 - -
Vifa2g02766 614 Pfam Brf1-like TBP-binding domain 421 546 IPR011665 -
Vifa2g02766 614 Gene3D - 173 264 - -
Vifa2g02766 614 MobiDBLite consensus disorder prediction 402 419 - -
Vifa2g02766 614 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Vifa2g02766 614 Gene3D - 62 165 - -
Vifa2g02766 614 Coils Coil 488 508 - -
Vifa2g02766 614 Gene3D Single helix bin 399 462 - -
Vifa2g02766 614 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Vifa2g02766 614 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Vifa2g02766 614 MobiDBLite consensus disorder prediction 402 421 - -
Vifa2g02766 614 SMART cyclin_7 176 259 IPR013763 -
Vifa2g02766 614 SMART cyclin_7 76 158 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02766 Vifa-Chr2 767360274 767381405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02766 1 530 Inorganic Solute Cotransporters AT2G01280 42.751 4.25e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02766 K15196 - gmx:100817609 656.751