Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02765 ATGGAGCTTGCAGCAAAGTTCCGTAATAGCGGACAAACATGTGTATGTGCAAATAGAATTCTTGTGCAAGAAGGATGTGGGAATTTGCCACAGCACATACTAGCTGGTTCATGTATATATGACAAGTTTGCAAATGCATTGCTTGATGCTGTTCAGAGTATGAAAGTTGGAGATGGTTTTAGTGAAGGTGTGGTTCAGTTTTCATGTATGATTAAAGAGGCTAAAGCCTTGGGGATGGCTCTCGGCGTCTCTTGTTTGAATGGGATTGAAGAAGCTAAAGCACAGTGTGCTTTGTTGAACTCTGAATCATTAAGCGATGGATGTTTCAGTTCAGATTCAGATATATTTCTCTTTGGTGCAAGGACAATGTACAGGGAAATCTGCCTTGGAGATGGTGGATATGTTGTATGTTATGAGATGGCAGAGATTGAAAATAAACTTGGATTGGGACGGGATTCATTGATTGCTCTCTCTTTGCTTCTCGACAGTGACTATCATCAAGGAGTCCACGATTCGAACTTCAAACCCTTCAAATTGGTTTTTACGACCAAGATATGCAATGGAACCGAAGCCGACGAAGAGGAGGCTTTTTCCGGTTTTCTATTTGGCACGAGATCGGCTTCAGGTGATTACGGGAAAAGCTTTTGCAGGTCACAGTTTGTGAAGGTGGATGTAGCAGAGGATGGAAGACTAACTGAAGGGCTTCCGAGAGTTACCGATGATGATGAGGATGGTATCTCATTGCCATGA 750 0.4267 MELAAKFRNSGQTCVCANRILVQEGCGNLPQHILAGSCIYDKFANALLDAVQSMKVGDGFSEGVVQFSCMIKEAKALGMALGVSCLNGIEEAKAQCALLNSESLSDGCFSSDSDIFLFGARTMYREICLGDGGYVVCYEMAEIENKLGLGRDSLIALSLLLDSDYHQGVHDSNFKPFKLVFTTKICNGTEADEEEAFSGFLFGTRSASGDYGKSFCRSQFVKVDVAEDGRLTEGLPRVTDDDEDGISLP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02765 249 Gene3D - 41 148 - -
Vifa2g02765 249 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 78 95 IPR006084 -
Vifa2g02765 249 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 154 169 IPR006084 -
Vifa2g02765 249 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 99 119 IPR006084 -
Vifa2g02765 249 SUPERFAMILY ALDH-like 4 65 IPR016161 GO:0016491
Vifa2g02765 249 Pfam XPG I-region 82 164 IPR006086 GO:0004518
Vifa2g02765 249 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 64 171 IPR006084 -
Vifa2g02765 249 SMART xpgineu 79 149 IPR006086 GO:0004518
Vifa2g02765 249 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 7 18 IPR016160 GO:0016491
Vifa2g02765 249 Pfam Aldehyde dehydrogenase family 4 76 IPR015590 GO:0016491
Vifa2g02765 249 SUPERFAMILY PIN domain-like 65 164 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02765 Vifa-Chr2 767237849 767240432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02765 3 66 Aldehyde Dehydrogenase Gene Family AT1G79440 59.375 1.79e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02765 K15338 - gmx:100806919 179.104