Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02764 ATGGACAAGAAGCTATCTCTCTTGTTCATATTTTCAGTAGTCTTGGTTAGTATTGGAGCTGAACCAGTAGAAGATAAACAAGCTCTACTTGATTTCCTTCATAAGATGAGTCATTCTCCACATGTCGATTGGGATGAGAACTCTTCTGTATGCCAAACATGGAGAGGAGTTACCTGCAACGCCGATCGATCTCGAGTTATCGCGGTTCGATTACCTGGAGCTGGATTAAGTGGTCCAATCCCACCAAACACGCTCAGTCGCCTCGCGGCTCTTGAGACTATAAGTCTTAGATCAAATGGCATCACTGGTTTTTTTCCTGATGGATTCTCTGAGCTGAAAAACTTGACTAGTCTTTATCTTCAATCTAACAAATTTTCTGGACCATTGCCATTGGATTTTTCTGTTTGGAATAATCTTACTGTTGTCAATTTATCCAACAATATTTTCAATGGTAGCATCCCTTTATCAGTTTCAAATCTGACTCATCTCAGTTCATTAGTCCTCGCAAACAACTCTCTTTCTGGTGAGATTCCCGATATCCATATCCATACCCTTCAAGAGCTAAATTTATCAAACAATAACCTTAGTGGTGTTGTCCCAAAATCACTTCTTAGATTTCCAAGTTGGGCTTTTTCTGGTAACAATCTTACGTCGGTAAATAGTTCACATCCACCGGCTTTGCCTATGCATCCACCTTATACTCTTCCACCTAAGAAAACCAAAGGACTCAGTGAAACTGCATTGTTGGGAATCATCATCGGTGTTTGCGCACTTGGATTTGCAGTGATTGCAGTTGCTATGATTCTGTGCTGCTATGACTTTTCTGCTGCAGGTGTTAAAGAATCTGTGAAATCTAAGAAAAAACAAGTCTCTATGAAAGCAGAAACTTCTGCGAGCCGAGATAAAAATAAAATAGTATTTTTTGAGGATTGCAATCTCGCATTCGATCTAGAGGATCTTTTGAGAGCTTCTGCTGAGATTCTTGGAAAGGGTACTTTTGGCACAGCATATAAAGCTGCTTTAGAGGATGCAAGCACTGTGGTGGTGAAGAGATTGAAAGAGGTTACTGTTGGGAAAAAGGAGTTTGAACAACACATGGAAGTTGTAGGGAAACTTAAGCATGAAAATGTGGATGCAATAAGAGCTTATTATTATTCAAAGGATGAGAAACTAGTTGTATTTGATTATTATCAACAAGGAAGTGTTTCTTCCATCTTACATGGTAACCGAGGGGAAGGAAGAGCTTCTCTAGACTGGGATAGCCGTTTAAGAATCGCGATTGGCACCGCGAGAGGAATTGCTCACATCCATGTTCAACAAGGAGGGAAACTAGTTCATGGAAACATAAAAGCCTCAAACATCTTCGTCAACGAACGAGGATACGGTTGTGTATCTGACATAGGTTTAGCAACATTGATGAGTTCAATACCTTCACCAGGGACAAGAGCATCAGGATACCGTGCGCCAGAAGTAACAGACATGCGTAAAGCAACACATTCGTCTGATGTATACAGTTTTGGTGTCCTGTTACTTGAGCTTCTAACTGGAAAATCTCCTATATATTCGGCAGAAGTCGAACAGAGTGTTCACTTGGTTAGATGGGTGAATTCGGTTGTGAGAGAGGAATGGACTGCAGAGGTTTTTGATGTGGAGCTTCTGAGGTATTCCAATATAGAAGAAGAAATGGTGGAGATGCTACAGATAGGGATGGCTTGTGCTGCAAGAATGCCAGATCAGAGACCGAAAGTGTCTGAAGTGGTGAGAATGATGGAAGGGATTCGTCCTGAAAATCGACCTTCGTCTACGGAATCTAGATCAGAAGTTTCAACTCCAACTGTTTATGCAACTTAA 1851 0.4106 MDKKLSLLFIFSVVLVSIGAEPVEDKQALLDFLHKMSHSPHVDWDENSSVCQTWRGVTCNADRSRVIAVRLPGAGLSGPIPPNTLSRLAALETISLRSNGITGFFPDGFSELKNLTSLYLQSNKFSGPLPLDFSVWNNLTVVNLSNNIFNGSIPLSVSNLTHLSSLVLANNSLSGEIPDIHIHTLQELNLSNNNLSGVVPKSLLRFPSWAFSGNNLTSVNSSHPPALPMHPPYTLPPKKTKGLSETALLGIIIGVCALGFAVIAVAMILCCYDFSAAGVKESVKSKKKQVSMKAETSASRDKNKIVFFEDCNLAFDLEDLLRASAEILGKGTFGTAYKAALEDASTVVVKRLKEVTVGKKEFEQHMEVVGKLKHENVDAIRAYYYSKDEKLVVFDYYQQGSVSSILHGNRGEGRASLDWDSRLRIAIGTARGIAHIHVQQGGKLVHGNIKASNIFVNERGYGCVSDIGLATLMSSIPSPGTRASGYRAPEVTDMRKATHSSDVYSFGVLLLELLTGKSPIYSAEVEQSVHLVRWVNSVVREEWTAEVFDVELLRYSNIEEEMVEMLQIGMACAARMPDQRPKVSEVVRMMEGIRPENRPSSTESRSEVSTPTVYAT 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02764 616 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Vifa2g02764 616 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 397 604 - -
Vifa2g02764 616 ProSiteProfiles Leucine-rich repeat profile. 184 205 IPR001611 GO:0005515
Vifa2g02764 616 SUPERFAMILY L domain-like 39 217 - -
Vifa2g02764 616 ProSiteProfiles Protein kinase domain profile. 322 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02764 616 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Vifa2g02764 616 Pfam Leucine Rich Repeat 185 211 IPR001611 GO:0005515
Vifa2g02764 616 Gene3D Ribonuclease Inhibitor 23 232 IPR032675 -
Vifa2g02764 616 FunFam pollen receptor-like kinase 1 291 396 - -
Vifa2g02764 616 Pfam Protein tyrosine and serine/threonine kinase 326 589 IPR001245 GO:0004672|GO:0006468
Vifa2g02764 616 SUPERFAMILY Protein kinase-like (PK-like) 326 591 IPR011009 -
Vifa2g02764 616 Gene3D Transferase(Phosphotransferase) domain 1 397 613 - -
Vifa2g02764 616 PANTHER OS05G0588300 PROTEIN 8 602 - -
Vifa2g02764 616 FunFam Probable inactive receptor kinase RLK902 22 181 - -
Vifa2g02764 616 Gene3D Phosphorylase Kinase; domain 1 286 396 - -
Vifa2g02764 616 ProSitePatterns Protein kinases ATP-binding region signature. 328 359 IPR017441 GO:0005524
Vifa2g02764 616 MobiDBLite consensus disorder prediction 597 616 - -
Vifa2g02764 616 MobiDBLite consensus disorder prediction 591 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02764 Vifa-Chr2 766477639 766479582 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02764 14 612 Receptor kinase-like Gene Family AT4G23740 55.484 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa2g02764 Pkinase 4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02764 - - gmx:100813065 928.317