Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02760 ATGGAACATCAACAACAACAACAACAACAACCTAGTATCCTATGCAAATACACAGAACATCACACTGTTACAAAAAAAGTCATCACACCCAAGAAAACCGCTAACAGCAACAAAACAAACTCAACTATATACCCAAGAGTCGTACAAATATCTGTCACCGACCCAGATGCCACTGACTCATCCAGCGATGAAGAAGAAAGTTTCTCCAGAAAAAGAACAAAGCGTTATATCCACCGTGTTGAAATTGAAACCGCCGCTAAAGCCGTCGTTAATCGAAAAAGACCTGCCGGAGAAGCATCCACTCTTAAAAGGCCAGCGAAAGCTCCTGCTGTCATCAGTGGTAGAAAGTTCCGAGGTGTACGGCAGAGGCCATGGGGGAAGTGGGCTGCTGAGATTCGCGATCCTGCTCGGAGAGTACGGCTTTGGTTAGGTACTTTCGAAACTGCAGAAGAAGCTGCTATGGTGTACGACAATGCCGCCATTAAGCTTCGTGGACCCGATGCTTTAACAAACTTTATCACGCCACCGCAGAGAGAACAACCGGTAGAAGTAGAACTCTCCGCCGTGAAAACCGAAATGAAAGTAATTGTAGACGCCGACGCTGACGGAGATGCAGAAGCTTCTGGGTCTGGTAATTCTAGTTATGATTCTGGAGAAGAACGATGTGTACCTCTCTCTTCTCCTACTTCAGTTTTAAATTTCCGTAGTAACTCCGGCGAGTCGGAGGGTCAAAACGAAGCTTGTGAAGTTTTCAGGGAATGTCAAGGTGAAACAAACTTGTTAGACGATACGGCGTCGTTTTTCCAACACGAGTTTCCTATGCCTTCTTGGGACGACGTGTTCAACTTCGAAACGCCAGAGTTTCCTATGATTTTTGAAGAAGAACAAAACACAATGTTTGGGGAAAGTACGACGCCGTTTTTGTGTGACCAAGAATTAAACGACAGCATTGTTCTTGCTGATTCCCTCATCAATTTCGACAAAGCTTGTTTCTCTTCTCCTTCTTCATCGTTATGCCAAGTGGATGATTTCTTCCAAGATATTTTGTTAGGCTCGGATCCTCTAGTTGTCCTTTGA 1077 0.4475 MEHQQQQQQQPSILCKYTEHHTVTKKVITPKKTANSNKTNSTIYPRVVQISVTDPDATDSSSDEEESFSRKRTKRYIHRVEIETAAKAVVNRKRPAGEASTLKRPAKAPAVISGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFITPPQREQPVEVELSAVKTEMKVIVDADADGDAEASGSGNSSYDSGEERCVPLSSPTSVLNFRSNSGESEGQNEACEVFRECQGETNLLDDTASFFQHEFPMPSWDDVFNFETPEFPMIFEEEQNTMFGESTTPFLCDQELNDSIVLADSLINFDKACFSSPSSSLCQVDDFFQDILLGSDPLVVL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02760 358 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Vifa2g02760 358 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Vifa2g02760 358 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Vifa2g02760 358 MobiDBLite consensus disorder prediction 202 221 - -
Vifa2g02760 358 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 45 257 - -
Vifa2g02760 358 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Vifa2g02760 358 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Vifa2g02760 358 CDD AP2 116 172 IPR001471 GO:0003700|GO:0006355
Vifa2g02760 358 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Vifa2g02760 358 MobiDBLite consensus disorder prediction 207 221 - -
Vifa2g02760 358 Gene3D AP2/ERF domain 115 174 IPR036955 GO:0003700|GO:0006355
Vifa2g02760 358 SUPERFAMILY DNA-binding domain 116 172 IPR016177 GO:0003677
Vifa2g02760 358 MobiDBLite consensus disorder prediction 46 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02760 Vifa-Chr2 764142945 764144021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02760 15 240 AP2-EREBP Transcription Factor Family AT4G27950 46.639 1.82e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa2g02760 AP2 4.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02760 - - gmx:100807598 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02760 2 764142945 764144021 Vifa2g02760 2 764142945 764144021 ECH