Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02757 ATGGACGAGAGCTTATACGATATATTTGAAGACAGAACAGAAGATGATCTTTTTGCCATTTTGGAGAGTCTAGAAAACTTCACTGATTTTCCTCTCATTAACAGCAACCAACCAGAAACTGTTATTACTCCAAAAGAGAATGATTCCACTTCCACCTCGAGATTACTGTCTCAGAAATCAATCTCTTCACGACAAGACTCTGAAACTGAAGTTGAAACTGACCACAAAAACAAGAGACAGAAACTCACACCGTCTTTGCTACAAGAACAGATCATTAACAGTGATGGACAACAAAGGGTCTCTCACATTACCGTCGAACGGAACCGAAGAAAGCAAATGAATGAGCATTTGTCCGTTTTGAGATCACTCATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATCGGAGGCGTAGTCGATTACATCAACGAGTTGCAACAACTACTCCAAGCGCTCGAAGCGAAGAAACAACGAAAAGCATACAACGAAGTACTAAGTCCAAGAATACTTTCATCGAGTCCACGACCTTCGCCTTTAAGTCCAAGAAAACCACCATTGAGTCCAAGACTAAACCTACCTATTAGTCCAAGAACTCCTCAACCAACTAGCCCTTACAAGCCAAGAATGCAACAAAGCTACAACAATATTATGCTTTCACCACTTGACCCTTCTCCTACTACTTCATCTGCTTCATCTGTGAATGATAATATCAATGAACTTGTTGCTAATTCTAAGTCTCATATTGCTGATGTAGAGGTCAAGTTTTCAGGTCCTCATGTTCTTTTGAAAACGGTTTCTCAAAGAATTCCAGGACAAGCTTTGAAGATTATATCTGCACTGGAAAATCTTGCACTTGAAATCCTTCATGTTAACATTAATAGTACTTCTGATGATACTATGTTGAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTGAGTGCAGAAGAATTGGCTCAACAAATCCAGCAAACATTCTGCTAA 996 0.3916 MDESLYDIFEDRTEDDLFAILESLENFTDFPLINSNQPETVITPKENDSTSTSRLLSQKSISSRQDSETEVETDHKNKRQKLTPSLLQEQIINSDGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQALEAKKQRKAYNEVLSPRILSSSPRPSPLSPRKPPLSPRLNLPISPRTPQPTSPYKPRMQQSYNNIMLSPLDPSPTTSSASSVNDNINELVANSKSHIADVEVKFSGPHVLLKTVSQRIPGQALKIISALENLALEILHVNINSTSDDTMLNSFTIKIGIECQLSAEELAQQIQQTFC 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02757 331 MobiDBLite consensus disorder prediction 170 211 - -
Vifa2g02757 331 MobiDBLite consensus disorder prediction 34 83 - -
Vifa2g02757 331 FunFam Transcription factor SPEECHLESS 89 163 - -
Vifa2g02757 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 168 IPR036638 GO:0046983
Vifa2g02757 331 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Vifa2g02757 331 Gene3D - 88 164 IPR036638 GO:0046983
Vifa2g02757 331 Coils Coil 141 165 - -
Vifa2g02757 331 SMART finulus 103 154 IPR011598 GO:0046983
Vifa2g02757 331 MobiDBLite consensus disorder prediction 180 206 - -
Vifa2g02757 331 CDD bHLH_AtFAMA_like 101 172 - -
Vifa2g02757 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Vifa2g02757 331 PANTHER TRANSCRIPTION FACTOR FAMA 8 330 IPR044283 GO:0003700|GO:0010052
Vifa2g02757 331 MobiDBLite consensus disorder prediction 34 64 - -
Vifa2g02757 331 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02757 Vifa-Chr2 762924100 762927027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02757 15 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 53.293 1.89e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa2g02757 HLH 8.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02757 K20558 - gmx:100777437 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02757 2 762924100 762927027 Vifa2g02757 2 762924100 762927027 ECH