Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02749 ATGAAACATATGCTTTTCCTTCTTGTCACTTTCAAGATTATAAAAAAGAAGTTGACAAAGCTACGAGATAGAATGGGGTTTCAAACAATTAACAACACTAAGAAATCAAAAGATGACTCAAACAACACTCATGAACAACAACACTCTTTAATTCCAAGGGCATTCAACTTGACTCATCATACTTTAACCACGAATAATACCAAATTCATTCACTCTGGCTATGATTCATGGCTGGTAACACACCCTTCAGCATTGAGCTCATTCGATAAATTGATGAAAGGTGTCAATGAGAAAAGGATCGTCGTATTTTTAGATTATGACGGTACCTTATCGCCCATTGTAAATAACCCTGATCGTGCTTTCATGTCTGATGAGATGCGTGCAGCAGTATCTGAAGTTGCTACTTATTTTCCAACAGCAATAGTTAGTGGAAGAGGCAGGGAAAAAGTAAAAGATTTTGTGAAGTTAAATAATTTATATTATGCTGGGAGTCATGGTATGGACATAATGGCACCATCAGTGGCAACTAACCAATGTGACAACACTACTCTTCACACAAATGGCAATGGAGTTCCCTTTCAACCTGCCAAGAAATTTTTGCCTGCAATTCAAGAGATATTAAAAAGATTAGAGAATGTAATAAAGGACATAGAAGGTGCAAGTATAGAAGACAACCAATTTTGTATCTCTGTACATTTTCGACAGGTTCATGAAAAGGATTATAATGTTTTGGAAGAGAAAGTGAAGTCTGTGCTTGCAAAATATCCATTGTTCTGCATGACTGAGGGTAAAAAGGTTATGGAAATAAGACCATCAATAAAATGGAACAAAGGAAATGCTATAGAATATTTTTTAGATACATTGGGATTAAGCAATTCCAACAATTTTCTTCCTTTGTATATTGGAGATGATAAAACTGATGAAGATGCATTTAAGGTTATACGAAGTAGAGGGCAAGGTTATCCGATTATAGTGTCTTCAACTCCAAGAGAAACGTGTGCTTTGTACTCTTTGCTTGACCCATCAGAAGTACTAATCTTCTTGTCAAGGCTAGCAAAATGGAGGAAGAGATCTTAA 1077 0.3575 MKHMLFLLVTFKIIKKKLTKLRDRMGFQTINNTKKSKDDSNNTHEQQHSLIPRAFNLTHHTLTTNNTKFIHSGYDSWLVTHPSALSSFDKLMKGVNEKRIVVFLDYDGTLSPIVNNPDRAFMSDEMRAAVSEVATYFPTAIVSGRGREKVKDFVKLNNLYYAGSHGMDIMAPSVATNQCDNTTLHTNGNGVPFQPAKKFLPAIQEILKRLENVIKDIEGASIEDNQFCISVHFRQVHEKDYNVLEEKVKSVLAKYPLFCMTEGKKVMEIRPSIKWNKGNAIEYFLDTLGLSNSNNFLPLYIGDDKTDEDAFKVIRSRGQGYPIIVSSTPRETCALYSLLDPSEVLIFLSRLAKWRKRS 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02749 358 Gene3D - 100 183 IPR023214 -
Vifa2g02749 358 Gene3D - 191 358 IPR023214 -
Vifa2g02749 358 NCBIfam trehalose-phosphatase 98 353 IPR003337 GO:0003824|GO:0005992
Vifa2g02749 358 FunFam Trehalose 6-phosphate phosphatase 201 358 - -
Vifa2g02749 358 FunFam Trehalose 6-phosphate phosphatase 196 272 - -
Vifa2g02749 358 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 38 357 IPR044651 GO:0004805|GO:0005992
Vifa2g02749 358 Pfam Trehalose-phosphatase 103 341 IPR003337 GO:0003824|GO:0005992
Vifa2g02749 358 NCBIfam HAD-IIB family hydrolase 102 315 IPR006379 -
Vifa2g02749 358 Coils Coil 203 223 - -
Vifa2g02749 358 SUPERFAMILY HAD-like 101 355 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02749 Vifa-Chr2 758097969 758099983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02749 98 352 Trehalose Biosynthesis Gene Families AT1G70290 27.106 2.08e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02749 K01087 - gmx:100809194 486.878