Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02748 ATGATGGAGTGCAACAAAGATGAGGCAGTTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCTGAAAGGGAATATATTGGTGCGAAGAAGTTTGCTATTAAGGCTCAAAGTCTGTATCCTGATTTGGAGGATGTTCCCCAGTTTTTGACTACTATTGACATTTATATATCTGCTGAGAACAAAGTAAGCGGAGAGATGGATTGGTATGGTATACTTGGAGTGAGCCCCTTTGCTGATGAAGAGACTGTTAGAAAGCAGTACAGGAAGTTAGCTCTCACCCTTCATCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTAAACTGGTTTCAGAGGCATGGAGTTTGTTATCAGACAAGACAAAGAGATTAGAGTATAACCAGAAGAGGAGTTTGAAAAGCTTCCAACATAATACTCCCAACCGTGGGCATCCATCAGCAGCGCCTAGTTCAAATAGTTATTATCATTTTAAGAAGAATACATCTTCAAATGTGAGGGCAGGAAATAATAATGTGAGGGCTGGAAATAATAATGTGAGGGCGCCTGCAACGTCTGTTCCTCCTCCTCAGAAAAAGGCTGAAACCTTTTGGACTATCTGTAATCGGTGCAGGACACATTATGAATATCTTAGAGTTTATTTGAGTCACACCCTTTTATGTCCCAACTGTAATGAAGCTTTTGTGGCTGTAGAGAGGGGTCCTCCTCCCAATGTTTTTAAGCCATCAAGTTCGCCCCCCTTGCATCAGCAGCACCAAAATTCTCGACGTCATCCTGGAAGTAATAATTCAAACCCTCAGTGGGGTTCCCACTCCAGAATGGCTGGTTTTGGTAGCACGGATGGATCGTCTTCTGTTGCCGCCCAAGCTGCAAGTGTTGTGCAGAAGGCTAGTGAGAAAGTGAAGAGAGAAGGAGCACCGTCAATTGCTGAATGGGAGAGGATTCAAATGTCTAAGAGGGCTGATGGTTCTATGAAGAAAAGGAGGACAGATGATATGCGCGCTAATGGTTATCCAGGATATATGGCAAACCATATGGCTATGGGACATGGAGCAGCAGGTCTTGCAAGCAAGCATAACAACAGCACGCGAGAGTTGTCAATGTTTGAGTTACGAAACATGTTGGTAGATAAGGCACGGAATGAAATTCGTAAGAAACTTGAAGAATGGAAGTTAAGGGCTGAAGCTAGGATTATCAACAAGAACAAAGAGAATAAGAGACACAAAAATACGCTTAATGATAAGACAACTGGTTCAGTGAAGTATAGAGAGTCCAATGTTAATGGTAATAAGCATGTTGGTATTGATTCTTCACCCGTCATATCTGATGATTCAGTTAAGAGCCAAGCCTATGTTACAATCAATGTTCCGGATCCTGATTTTCACAATTTTGACTTGGATAGAGCTGAAAGTTCCTTTGCAGAAGACCAGGTCTGGGCTGCTTATGATGATGATGATGGAATGCCTAGATATTATGCTAGAATTCACAAGGTGATCTCCATAAAGCCATTTAGAATGCGAATCAGTTGGCTTAACTCTCGAAACAACACTGAATTGGGCCCAATAGATTGGGTTAGGTGGACAAAAGGCAACAGAGGAGTTGTGCGCATCTTTCCAGGTAGGGGAGAAGTCTGGGCACTTTATAGAAACTGGTCCCCTGATTGGAATGAACATACTCCAGATGAAGTGATACATAAGTATGACATGGTAGAGGTGCTTGATGATTTCAGTGAAGAGCAAGGTATATCAGTCACTCCCCTTGTTAAGTTTCCTGGCTTTAGGACAGTATTTCGAAGGCACCAGGACCAGAGTGAGGTTAAGAGGATTCCTAAAGAGGAGATGTTCCGATTCTCTCATCAGGTTCCTAATCACTTGCTTAGTGGTCAAGAAGCTCATAATGCTCCAATAGGCTGTAGAGAGTTGGATCCAGCAGCTACTCCTTTAGATCTCCTTCAGATAGAAACGGAAGCTTACGACACTGCAGGAGAGAGGATGCTCCGAAACCTTGTAGAGCAGAAATGTTCAAACGAGGGTGACAAACAAAAAATGGAATGGTAG 2058 0.4276 MMECNKDEAVRAKEIAERKFSEREYIGAKKFAIKAQSLYPDLEDVPQFLTTIDIYISAENKVSGEMDWYGILGVSPFADEETVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKTKRLEYNQKRSLKSFQHNTPNRGHPSAAPSSNSYYHFKKNTSSNVRAGNNNVRAGNNNVRAPATSVPPPQKKAETFWTICNRCRTHYEYLRVYLSHTLLCPNCNEAFVAVERGPPPNVFKPSSSPPLHQQHQNSRRHPGSNNSNPQWGSHSRMAGFGSTDGSSSVAAQAASVVQKASEKVKREGAPSIAEWERIQMSKRADGSMKKRRTDDMRANGYPGYMANHMAMGHGAAGLASKHNNSTRELSMFELRNMLVDKARNEIRKKLEEWKLRAEARIINKNKENKRHKNTLNDKTTGSVKYRESNVNGNKHVGIDSSPVISDDSVKSQAYVTINVPDPDFHNFDLDRAESSFAEDQVWAAYDDDDGMPRYYARIHKVISIKPFRMRISWLNSRNNTELGPIDWVRWTKGNRGVVRIFPGRGEVWALYRNWSPDWNEHTPDEVIHKYDMVEVLDDFSEEQGISVTPLVKFPGFRTVFRRHQDQSEVKRIPKEEMFRFSHQVPNHLLSGQEAHNAPIGCRELDPAATPLDLLQIETEAYDTAGERMLRNLVEQKCSNEGDKQKMEW 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02748 685 SUPERFAMILY Chaperone J-domain 59 127 IPR036869 -
Vifa2g02748 685 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vifa2g02748 685 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vifa2g02748 685 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vifa2g02748 685 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vifa2g02748 685 MobiDBLite consensus disorder prediction 312 331 - -
Vifa2g02748 685 Pfam DnaJ domain 67 128 IPR001623 -
Vifa2g02748 685 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Vifa2g02748 685 SMART dnaj_3 66 123 IPR001623 -
Vifa2g02748 685 MobiDBLite consensus disorder prediction 237 283 - -
Vifa2g02748 685 MobiDBLite consensus disorder prediction 133 191 - -
Vifa2g02748 685 CDD DnaJ 67 120 IPR001623 -
Vifa2g02748 685 PANTHER BNAC03G44070D PROTEIN 2 647 - -
Vifa2g02748 685 MobiDBLite consensus disorder prediction 244 283 - -
Vifa2g02748 685 MobiDBLite consensus disorder prediction 133 185 - -
Vifa2g02748 685 Pfam Domain of unknown function (DUF3444) 453 518 IPR024593 -
Vifa2g02748 685 Pfam Domain of unknown function (DUF3444) 525 630 IPR024593 -
Vifa2g02748 685 Gene3D DnaJ domain 64 177 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02748 Vifa-Chr2 757617190 757619474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02748 5 236 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 31.250 1.04e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02748 - - cam:101501612 1117.83