Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02747 ATGGTATGCGGAAGGTGTGTGAGTTCTATTTTTGTTCGAGCTGGAATTTTGAACAGGAGATTTCGATTCGACTTTGTTGGGAAGGGTTTGTTGCCTAGAGTTGTTCCGGAAGTTGCTGTTTATTTTCCGAATCGGGTGTTTAAGAGGTATCTAGGGATGATGGTTGATACAGGCTCTATGTCGACTAGGGCTGGTCCGTCTATGGATACGGCGTCGCAGAAAGATGATGATTCTGCTCGGTCCGGTTTTGTTACCGGTGGATGTAAGAGTGAAGATGAAAGACTTGTCTGTGGGTATTCAAGCTTTAGGGGGAAGAGAGTGACCATGGAAGATTTCTATGATGTTAAGACATCAATCATTGACGGCCGTTCAGTGAGCTTATTTGGAATATTTGACGGTCATGGTGGTTCTCGTGCTGCTGAGTATTTGAAGGATCATCTATTTGAAAATCTCACGAAGCATCCAAAGTTTTTGACGGATACCAAATTGGCTATAAGTGAAACATATCAGCAAACCGATGCTGAGTTTCTGGACTCTGTAAAAGATAATTTCCGGGATGATGGTTCTACTGCTTCAACAGCTGTTTTGGTCGATAACCATCTTTATGTTGCTAATGTTGGAGATTCTAGAACTGTAATATCAAAAGCTGGAAAAGCAATTGCTCTCTCTGAGGATCATAAGCCTAATAGAAGTGACGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCATTTGGCAACCGTATGCTGAAGCCGTTTGTTGTAGCTGAACCTGAGATCCAGGAGCAGAAAATAGATGAAGATACTGAGGTGCTTGTTCTTGCAAGTGATGGACTCTGGGATGTAGTACAGAATGATGATGCTGTTTCTATTGCACGGGCAGAAGAGGCAGCCGAGGCAGCTGCTCGGAAGTTAACAGAAGCCGCATTTAATCGCGATCCAGCTAGCAGTCAGCATGCATGA 1014 0.4467 MVCGRCVSSIFVRAGILNRRFRFDFVGKGLLPRVVPEVAVYFPNRVFKRYLGMMVDTGSMSTRAGPSMDTASQKDDDSARSGFVTGGCKSEDERLVCGYSSFRGKRVTMEDFYDVKTSIIDGRSVSLFGIFDGHGGSRAAEYLKDHLFENLTKHPKFLTDTKLAISETYQQTDAEFLDSVKDNFRDDGSTASTAVLVDNHLYVANVGDSRTVISKAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQEQKIDEDTEVLVLASDGLWDVVQNDDAVSIARAEEAAEAAARKLTEAAFNRDPASSQHA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02747 337 MobiDBLite consensus disorder prediction 62 85 - -
Vifa2g02747 337 Coils Coil 308 328 - -
Vifa2g02747 337 FunFam Probable protein phosphatase 2C 76 88 335 - -
Vifa2g02747 337 Pfam Protein phosphatase 2C 98 328 IPR001932 -
Vifa2g02747 337 PANTHER PROTEIN PHOSPHATASE 77 328 IPR015655 GO:0004722|GO:0006470
Vifa2g02747 337 CDD PP2Cc 96 308 IPR001932 -
Vifa2g02747 337 SMART PP2C_4 86 337 IPR001932 -
Vifa2g02747 337 ProSitePatterns PPM-type phosphatase domain signature. 127 135 IPR000222 GO:0043169
Vifa2g02747 337 Gene3D - 86 334 IPR036457 -
Vifa2g02747 337 ProSiteProfiles PPM-type phosphatase domain profile. 96 337 IPR001932 -
Vifa2g02747 337 SUPERFAMILY PP2C-like 94 329 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02747 Vifa-Chr2 756464607 756471101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02747 1 332 PP2C-type Phosphatase Gene Family AT5G53140 62.248 2.67e-146 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02747 K17506 - gmx:100805795 472.626