Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02742 ATGACTTTTCAGCAAGATAAGTTTGTTAGATTTCAGGACTGGAATTCTGAGATGAACTCTCCTGGAATTCATGTGACGCGTTCCGGGAGAATTAGAACTACACTGAAGTCAGTTTCTAATAAGTTTCAAAGGGGGTTTGAATCTAGTTCTGAGAGGATAAAGGGATTTGCGAAACCGTTTAAATCTTTTTCCCACCACAGTTTGCTTACTAGGTTTTTTAGTTTTACAAAGAAAATCCTTGACCCGCAGGGTCCTTTTCTTCAAAAATGGAATAAGATATTTGTCTTGTCTTGTCTTATTGCTGTATCAATTGATCCTTTGTTCTTCTATATCCCTGTGATTGATGATGACAAGAAATGTCTTTCACGGGACAGAAAAATGGAAACTACGGCAACTGTTTTAAGGTCTTTCTCCGATATTTTTTATATTATACATATACTTTTCCAATTTCGTACGGGATTCATTGCTCCATCTTCTCGAGTATTTGGAAGAGGGGTTTTGGTTGAAGATTCTTGGGCAATAGCAAAGAAATATATGTCATCGTACTTCTTAATTGACATTCTCGCTGTTCTTCCCCTCCCACAGGTGGTGATTCTATTTATCATTCCGAAGATGAGAGGCTCAGAATCATTGAACACGAAAAATTTGCTGAAATTTATTGTCTTCTTTCAATATGTGCCACGGTTTGTACGAATTGCTCCACTATATAAAGAAGTTACAAGGACCTCTGGCATTCTCACAGAAACAGCATGGGCTGGAGCTGCATTCAACCTCTTTCTTTACATGCTTGCAAGTCATGTTCTTGGTGCCTTTTGGTACTTGTTTTCTATTGAAAGAGAAGCCACATGCTGGCAAATTGCATGTCGAAAAAATAGCACCTGTATAAAGGCTCAAATGTATTGTGACGATCGTCATGCTTTGAGCACAATTTCAACATTCCTAAATGATTCCTGCCCAATACAGAATCCAAATACAACACTCTTTAATTTTGGAATTTTCCTTGATGCTCTTCAATCCAAGGTTGTGGGGTCAACCGACTTTCCACAGAAATTTTTTTATTGTTTCTGGTGGGGTCTAAAGAACTTGAGTTCTCTTGGTCAGAATCTGGCAACAAGTACTTTTGTTTGGGAAATCTGCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTATTATTTGCATTTCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGACGCGGAACAGTGGATGTCTCATCGACTACTTCCTGACAGCTTGAGAGAAAGAATCAGACGACACGAGCAATACAAATGGCAAGAAACCAGAGGAGTTGATGAAGACAACTTGATTCGGAACCTTCCCAAGGATTTGAGAAGAGACATCAAGCGTCATCTTTGCTTGGCTTTACTGATGAGGGTACCGATATTTGAGAAAATGGACGAGCAGCTTTTGGATGCAGTATGTGACTGCCTCAAACCAGTACTCTATACAAAAGAAAGCTGCATTGTCCGCGAAGGAGATCCTGTGGATGAGATGCTCTTCATAATGCGGGGCAAACTATTGACTGTGACAACAAACGGTGGAAGAACAGGTTTCTTTAACTCTGAATACCTCAAAGCTGGTGACTTCTGTGGAGAGGAGCTACTCACGTGGGCATTAGATCCTCGTTCCTCGGCAAATCTTCCCATCTCAACCAGGACTGTCCAAACACTTTCAGAAGTGGAAGCATTCGCTCTAAAAGCCGAGGATTTGAAGTTTGTTGCATCACAATTTCGGCGCCTTCACAGTAAGCAGCTTCGCCACACTTTTAGGTTTTACTCCCAACAATGGCGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGAGGCGCTATTGTAAAAAGAAGCTTGAAGAATCTCTTAGGGAAGAAGAAAATAGGTTGCAAGATGCATTGGCCAAGGAAGGTGGTAGTTCACCTAGCTTAGGTGCTACAATATATGCTTCAAGATTTGCTGCTAATGTGCTTCGAGCTATTCGGAGAAATGGCACAAGAAAGACTAGGGTGCCTGAGAGGCTACCTCCAATGATGCTTCAGAAGCCTGCTGAACCTGATTTTACTGCTGAAGAGCAATAG 2136 0.4106 MTFQQDKFVRFQDWNSEMNSPGIHVTRSGRIRTTLKSVSNKFQRGFESSSERIKGFAKPFKSFSHHSLLTRFFSFTKKILDPQGPFLQKWNKIFVLSCLIAVSIDPLFFYIPVIDDDKKCLSRDRKMETTATVLRSFSDIFYIIHILFQFRTGFIAPSSRVFGRGVLVEDSWAIAKKYMSSYFLIDILAVLPLPQVVILFIIPKMRGSESLNTKNLLKFIVFFQYVPRFVRIAPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIEREATCWQIACRKNSTCIKAQMYCDDRHALSTISTFLNDSCPIQNPNTTLFNFGIFLDALQSKVVGSTDFPQKFFYCFWWGLKNLSSLGQNLATSTFVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPIFEKMDEQLLDAVCDCLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPRSSANLPISTRTVQTLSEVEAFALKAEDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYCKKKLEESLREEENRLQDALAKEGGSSPSLGATIYASRFAANVLRAIRRNGTRKTRVPERLPPMMLQKPAEPDFTAEEQ 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02742 711 SUPERFAMILY Voltage-gated potassium channels 81 404 - -
Vifa2g02742 711 SMART cnmp_10 482 613 IPR000595 -
Vifa2g02742 711 Gene3D Helix hairpin bin 408 473 - -
Vifa2g02742 711 FunFam Cyclic nucleotide-gated ion channel 1 480 598 - -
Vifa2g02742 711 Coils Coil 634 654 - -
Vifa2g02742 711 Gene3D - 87 406 - -
Vifa2g02742 711 ProSiteProfiles cAMP/cGMP binding motif profile. 482 565 IPR000595 -
Vifa2g02742 711 MobiDBLite consensus disorder prediction 684 711 - -
Vifa2g02742 711 CDD CAP_ED 482 613 IPR000595 -
Vifa2g02742 711 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Vifa2g02742 711 Pfam Cyclic nucleotide-binding domain 502 593 IPR000595 -
Vifa2g02742 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 65 706 - -
Vifa2g02742 711 Gene3D Jelly Rolls 480 600 IPR014710 -
Vifa2g02742 711 Pfam Ion transport protein 90 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa2g02742 711 SUPERFAMILY cAMP-binding domain-like 411 604 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02742 Vifa-Chr2 755144877 755152164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02742 1 710 Ion Channels AT5G53130 78.412 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02742 K05391 - gmx:100817516 1251.11