Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02731 ATGAACTTTCCCAATCTCATTCTCATCCTAATTTGTTTCCATTTCCTCTTCAACCTTCATCAAACACAAGCTGAATCAGAAGCATGTTTAGACACTGCTTGCCACACAAATCAACCACCAATCCGATTCCCATTCTACATAGAAACAATACAACCAAACAACACATGTGGCTTCCCAGGTTTCAAACTACTATGCAGCAATAAAAATGGAAAAAACCAAACACTCCTTAATCTACCTTACATGGAAGAATTCAACATCCAAAAAATAAACTATGCTACACAAGAACTTTTCGTCAATGATCCTAATAACTGTCTCCCAAAACGACTTCTCCAACTTAACCTCTCTTCTTCTCCATTCCATGCCGTTTACTATCAACAGTTCACCTTTTTCAACTGTTCCTTCAATTTTAAACATCTCACGTCTCGTTACAAACCAATACCTTGTCTAACTGATTCTTCCAAGTACAACGTTTTCGCAACACCGTCGCTTACGGTGTTTTTGCACTTGTCGTCTGTTTGTGACATAGTTGACACCGTGAATGTGCCGGTTCAATCGCCGTTTTATGATCAAGTGTTGTCGTCTCAACTCGACGATGATCTGAGGTTGTCGTGGAATTCGCCGTCATGTCGTAGGTGTGAGTCTCATGCTGGAAGATGTGGGTTACAACTTAATTCCAGTTTTGAAATTTCTTGTTACAATGTTCCTCCAACACAAGGTATTTCCCGTGGTGCAAGTTACGCCATAGCCATATCTATAGGAGTACCAACACTATTATGTTTCATTTTGATATTGAGCTGGATATGCAGCAATCTCAGATATGGAGTCCATGGTTGGACTTGGGCTCGTGATACGGTGGCAGATTTGGAGTCTCTTCTTAATTCTCAACAATACAACAACATCTTAGGTCTTGATAAACCTACAATTGAATCTTACCAAAAAATAGTTATAGGTGATGATGGCATTCACTTACCAAGACCTAATGATAAGACATGCTCAATATGCTTGTCGGAGTATATGCCTAAAGAGACCGTTAAAACTATGCCTAACTGTGAACATTGCTTTCATGCGCAATGCATTGATGAATGGCTCCCACTGAATGCGTCGTGTCCAATCTGTCGAACTTCTCCAACATGCTTACTACCATCAGAAAATCTAGCTCAATCATGA 1167 0.3993 MNFPNLILILICFHFLFNLHQTQAESEACLDTACHTNQPPIRFPFYIETIQPNNTCGFPGFKLLCSNKNGKNQTLLNLPYMEEFNIQKINYATQELFVNDPNNCLPKRLLQLNLSSSPFHAVYYQQFTFFNCSFNFKHLTSRYKPIPCLTDSSKYNVFATPSLTVFLHLSSVCDIVDTVNVPVQSPFYDQVLSSQLDDDLRLSWNSPSCRRCESHAGRCGLQLNSSFEISCYNVPPTQGISRGASYAIAISIGVPTLLCFILILSWICSNLRYGVHGWTWARDTVADLESLLNSQQYNNILGLDKPTIESYQKIVIGDDGIHLPRPNDKTCSICLSEYMPKETVKTMPNCEHCFHAQCIDEWLPLNASCPICRTSPTCLLPSENLAQS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02731 388 Pfam Ring finger domain 330 373 IPR001841 -
Vifa2g02731 388 SMART ring_2 331 372 IPR001841 -
Vifa2g02731 388 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 376 IPR046948 -
Vifa2g02731 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 378 IPR013083 -
Vifa2g02731 388 SUPERFAMILY RING/U-box 330 377 - -
Vifa2g02731 388 Pfam Wall-associated receptor kinase galacturonan-binding 29 100 IPR025287 GO:0030247
Vifa2g02731 388 CDD RING-H2_EL5-like 331 373 - -
Vifa2g02731 388 ProSiteProfiles Zinc finger RING-type profile. 331 373 IPR001841 -
Vifa2g02731 388 Pfam Wall-associated receptor kinase C-terminal 178 232 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02731 Vifa-Chr2 752378476 752380013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02731 27 377 C3H Transcription Factor Family AT2G46495 34.916 3.85e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02731 - - gmx:100818969 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02731 2 752378476 752380013 Vifa2g02731 2 752378476 752380013 ECH