Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02729 ATGTCGTCTACTTTGCTGGAAGTGACACGTGCCGCACACGAGGAAGTAGAGAGGTTGGAGAGATTGATAGTGAAGGATCTCCAGAATGAGCCTACATCCAACAAGGATCGTTTGTTTCAGAGCCACCGCGTTAGGAATATGATCGACACCATCACCTCCACCACCGAAAGACTTGTTGAGATTTATGAAGACAAAGACAGTGCAAGGAAGGATGAGATTGCTGCTCTGGGAGGACAAACTGCTACTGGAGTTAATGTTTTCAGCGCCTTTTACGATAGACTCAAAGAGATACGAGAGTATCATAGGAAGCATCCGGTTGCACGTGTTGTTGATGCTAATGACGATGTTGAAGCTCTTCTTAAAGAGGAACCTCAAATTGAGTTCAGCGGAGAGGAAGCTTTTGGTCGATACTTAGACATGCATGAATTATACCATCAGTATGTCAATTCCAAATTTGGAGAGCCAATTGAGTATTCTGCATACCTTGATGTTTTTTCTGAAACAGATAAGATTCCACGCAAAATGAAAACTACCAGGCAGTATAGGGAGTACCTGGAGAATCTTTTGGAGTATCTGATATATTTTTTCCAGCGCACAGAACCCCTGCAAGATCTTGATCGAATCTTTTCAAAGGTAACAAATGAGTTTGAAGAAAATTGGGCCACTGGAACAGTACATGGATGGGAGAATGTCAATCAGGAGAATGGACACGCGCCTACTCAGCACACTGCAATTGATCTTGATTATTACAGTACAATTGAAGAGCTTATAGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTGGCTGCACTAGGACTTAAAACTGGAGGCACTGTTCAGCAACGTGCAGAGAGGCTCTTCCTCACCAAGCATACACCTCTTGAAAAGTTGGAAAAGAAGCATTTTATCAAGGGAGCGCGTGGTTTAGAAAATAATGGGGTGGCTGCTGCTCCACAAGAAGGAAATTTAAAACAAGAAAATTTGAAAGAAGTTGCATTAATGGAGGCCAAAATGAATAGACTGTGTGATTTGTTAGATGAGACAATTGTTCGAACAAAAGACAATATTGTAAAGAAGCAAGCCCTGACTTACGAGGAAATTGAGGCAGAACGTGAGGAGGAAGAGACACAAGAGGACTCTGAAAGCGAAGATGATGAACAGCAGATTTATAATCCCTTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGTTACATGGTCTCGGTCAGGAATTTAAGTGTGAGATATGCGGGAACTACAGTTATTGGGGTCGTCGCGCTTTTGAACGACATTTTAAAGAATGGCGCCATCAACATGGGATGCGGTGCCTTGGTATACCAAATACAAAGAATTTCAATGAAATAACATCAATTGAGGAAGCAAAGGAACTGTGGAAGAAGATACAGCAGAGACAAGGAGTAAACAAGTGGCGGCCAGATCTAGAGGAAGAGTACGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACACTGATTTACAGCGCCAGGGACTGATATAA 1542 0.4222 MSSTLLEVTRAAHEEVERLERLIVKDLQNEPTSNKDRLFQSHRVRNMIDTITSTTERLVEIYEDKDSARKDEIAALGGQTATGVNVFSAFYDRLKEIREYHRKHPVARVVDANDDVEALLKEEPQIEFSGEEAFGRYLDMHELYHQYVNSKFGEPIEYSAYLDVFSETDKIPRKMKTTRQYREYLENLLEYLIYFFQRTEPLQDLDRIFSKVTNEFEENWATGTVHGWENVNQENGHAPTQHTAIDLDYYSTIEELIEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLEKKHFIKGARGLENNGVAAAPQEGNLKQENLKEVALMEAKMNRLCDLLDETIVRTKDNIVKKQALTYEEIEAEREEEETQEDSESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02729 513 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Vifa2g02729 513 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
Vifa2g02729 513 PANTHER SPLICING FACTOR SF3A-RELATED 244 307 - -
Vifa2g02729 513 ProSiteProfiles Zinc finger matrin-type profile. 418 449 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vifa2g02729 513 MobiDBLite consensus disorder prediction 367 386 - -
Vifa2g02729 513 Pfam SF3a60/Prp9 C-terminal 394 513 IPR024598 GO:0000398|GO:0003723|GO:0005681
Vifa2g02729 513 Coils Coil 357 384 - -
Vifa2g02729 513 Pfam Replication stress response SDE2 C-terminal 224 304 IPR025086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02729 Vifa-Chr2 751756791 751762968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02729 1 513 C2H2 Transcription Factor Family AT5G06160 74.854 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02729 K12827 - gmx:100815393 890.182