Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02724 ATGATTATCAAGCGGAACTTGAAATCTCAAATGCCGCGTTTGAAACGGTGTAGAATCGGTGACTCGGTTGGAGAAGATGAAGACTGTTCTTATGCTTCTAAGAAGAGGAAAACGAGTGGTTGTTATTATCCTTTGAGCCTTTTAGGTGATGTTGCCGCCGGTTTAATTCCGGTGAGTTTTCACGGTTTGTTGAGTGCTGGTGTTTCCGAGAGGTCGTGGTGCACGCAACCTCCGTGCTCCCCCGGTGAAGTTGAATCGAACGAGTTCTCCAAGGAGATGGTTCCGATGAAGAAAAATCAGGTTCAGCGACCGCCGCTTGTTAGAACTTCGAGAGGGCGAGTTCAGGTTCTCCCTTCTCGTTTTAACGACTCTGTTATTGATGATTGGAAAAAGGATGGGAAAACCAGCTTGCGTGATTTTGAAGTTCAAGGTGAATTTAAATGCAAGAAGGACAGGGTAGTGCCGAGAACATTTAATAACAATGTCAGAAAAGGGCGTAACAATGGGAAAATTGGTTATAAGCAACGTAAGTATTCGGCATTGTCTGAAGATGATGATTTTACCTTGAGTAGGAGGCATAAGAGTTTTGGTAGAAGGAGGGGTTCAGCTTTGGATGAAGATGAAGATGATTTGGTGATGGGTAGTGATGATATAGTTGATTTGAAGGTGAGTAATCAAGAGAAGAAAGATGGGTTGTATGGGCCAGAAAATTTTTATGCCTGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTTTTTGGCCAGCTGTTGTTATTGATCCTATGAAACAAGCACCTGAGTTGGTCCTAAGGTCTTTTATAGCGGATGCTGCATGTGTCATGTTTCTTGGCAATGCTGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATTTATGGATTATGTTGACAGGTTTCAAGAGCAGCCTGAATTGAGTAATTATAGTCCCTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCCGACCAAGGCTTTACAGAGAAGTTGTTCGATGATATAAATGCAGCCGCTGGTGCTACTGTTTATGATGATACTATTCTGAAATCCTCCTTCCGGGAGATATGTGGTTCAAACCAGTATGGAAGAGTGGGAAAATATTTTCTGAACCAAGATTTATTTGATAATAAAGACACACGATCATGTGAAGCGTGTGGATTGACTCTTTCTTACAAGATATCAAGGAAAACTAATGGTTTGACTCCTAATGGTCAACTCCTATGTAAAACATGTGCAAGGTTAACGAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGCTGGGTGTTCCCTTGGAATCAGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGTGACCAAATTTCTAGAAACCATTTCAAGGATCTTGAAAGCACTGATTATTACTGCCCTACATGTAGAGGCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAATCAAAGACAAAAGTCAGATCAAACCGAAACAATGGGCAGCTAGTGCTTTCGAATAAGGTCACTGTTCTCTGCAATGGTGTGCAAGGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCTCTTAGCGAATGGGAACGGCACACAGGTTCCAAATTAAGAAATTGGAAAACAAGTATTATTGTGAAAGACTCTAGGCTACCTTTGGAACAATGGATGCTGCAGGTTGCCGAAGTTCATGCTAATGCTCTAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAAAAGTTGCTTACCTTCTTGAAAGAGAGGTATGAACCTGTTTATGCTAAGTGGACTACAGAGCGTTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGTATTAAATGTTAAAGACTTCACATCTTGGGTTTGTAAGACCTGCGAGACACCTAAAATCAAGCGGGAGTGTTGCCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATATTGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGAAAATGGAACCTGCATTGGGCATTCTTAGTATTCCATCAAACTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCCTGCACACAGTGCTGCAAATGCTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAGTTGCATTGTTCGAAGAAAAATGGGAAGACGATAACAAAAATGGTTTCATATTGTGCTTACCACAGAGCTCCAAATCCAGACAATGTTTTGATTTTGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTTCAAAAGAAAAAAATTGGATCAAGGTTAATCTCATCTAACAGAATAAAGCAAGAAGAGACTCCTATTGATAGCACTGAGCATGACCCGTTCTCTGCTGCTCGGTGTCAAATCTTCAAAAGAACAAATCATACCAGAAAGAGAGCTTCTGATGAAGCAGTTTTTCATCAAGCGAGGGGTCACTGCCACCATCCAAAGGATGCAATACAGAGTTTAAATGCATACAGAACAGTAAAGGAGCCTCCAGCTTTCTCGTCTTTCAGAGAACGACTTTACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGGGAACAAGTGAGACGCAGCATTGCTGATTTGAGGGAAGCACGCTATAGAGCAGAAGGGAAAGACTGTTATCTATTTAAGATAAGCGAAGAAGTGGTGGTTGATGCCACTGATAAAGGGAATATAGCACGACTAATCAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGTGTGTGGGAGATGATGAGAGCCGGATTGTACTCATTGCTAAGACCAACATATCTTCTGGTGACGAGCTAACTTATGACTACTTATTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCCTGCATGTGTAAAGCTTCGAGTTGCAGGAAATTCATGAATTAG 3201 0.4167 MIIKRNLKSQMPRLKRCRIGDSVGEDEDCSYASKKRKTSGCYYPLSLLGDVAAGLIPVSFHGLLSAGVSERSWCTQPPCSPGEVESNEFSKEMVPMKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDDWKKDGKTSLRDFEVQGEFKCKKDRVVPRTFNNNVRKGRNNGKIGYKQRKYSALSEDDDFTLSRRHKSFGRRRGSALDEDEDDLVMGSDDIVDLKVSNQEKKDGLYGPENFYACDIVWAKAGRKEPFWPAVVIDPMKQAPELVLRSFIADAACVMFLGNAGNENQRDYAWVKHGMIFPFMDYVDRFQEQPELSNYSPSDFQMAIEEAFLADQGFTEKLFDDINAAAGATVYDDTILKSSFREICGSNQYGRVGKYFLNQDLFDNKDTRSCEACGLTLSYKISRKTNGLTPNGQLLCKTCARLTKSKHYCGICKKVWNHSDSGSWVFPWNQVRCDGCKVWVHAECDQISRNHFKDLESTDYYCPTCRGKFDFELSDSEKSKTKVRSNRNNGQLVLSNKVTVLCNGVQGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWKTSIIVKDSRLPLEQWMLQVAEVHANALVSVKPKKPSLKERKQKLLTFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGVLNVKDFTSWVCKTCETPKIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSKKNGKTITKMVSYCAYHRAPNPDNVLILQTPLGVISTKSLLQKKKIGSRLISSNRIKQEETPIDSTEHDPFSAARCQIFKRTNHTRKRASDEAVFHQARGHCHHPKDAIQSLNAYRTVKEPPAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMCVGDDESRIVLIAKTNISSGDELTYDYLFDPDEPDEFKVPCMCKASSCRKFMN 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02724 1066 ProSiteProfiles Post-SET domain profile. 1050 1066 IPR003616 -
Vifa2g02724 1066 SMART set_7 924 1047 IPR001214 GO:0005515
Vifa2g02724 1066 ProSitePatterns Zinc finger PHD-type signature. 636 681 IPR019786 -
Vifa2g02724 1066 Pfam PHD-zinc-finger like domain 689 801 - -
Vifa2g02724 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 685 804 IPR013083 -
Vifa2g02724 1066 FunFam Histone-lysine N-methyltransferase 899 1066 - -
Vifa2g02724 1066 SUPERFAMILY FYVE/PHD zinc finger 634 698 IPR011011 -
Vifa2g02724 1066 PANTHER PHD FINGER PROTEINS 11 510 - -
Vifa2g02724 1066 Pfam PWWP domain 242 334 IPR000313 -
Vifa2g02724 1066 CDD ePHD_ATX3_4_5_like 690 801 IPR041955 -
Vifa2g02724 1066 Gene3D - 235 340 - -
Vifa2g02724 1066 SUPERFAMILY FYVE/PHD zinc finger 434 496 IPR011011 -
Vifa2g02724 1066 CDD PHD_ATX3_4_5_like 635 681 IPR042011 -
Vifa2g02724 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 684 IPR013083 -
Vifa2g02724 1066 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 496 IPR013083 -
Vifa2g02724 1066 Gene3D SET domain 819 1066 IPR046341 -
Vifa2g02724 1066 Pfam PHD-finger 648 682 - -
Vifa2g02724 1066 ProSiteProfiles Zinc finger PHD-type profile. 633 684 IPR019787 -
Vifa2g02724 1066 CDD SET_SETD1-like 911 1062 - -
Vifa2g02724 1066 SUPERFAMILY SET domain 917 1063 IPR046341 -
Vifa2g02724 1066 FunFam Histone-lysine N-methyltransferase 685 804 - -
Vifa2g02724 1066 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1066 IPR025780 -
Vifa2g02724 1066 SUPERFAMILY Tudor/PWWP/MBT 233 337 - -
Vifa2g02724 1066 SMART PHD_3 435 493 IPR001965 -
Vifa2g02724 1066 SMART PHD_3 635 682 IPR001965 -
Vifa2g02724 1066 SMART PHD_3 746 802 IPR001965 -
Vifa2g02724 1066 Pfam SET domain 935 1040 IPR001214 GO:0005515
Vifa2g02724 1066 ProSiteProfiles Extended PHD (ePHD) domain profile. 687 802 IPR034732 -
Vifa2g02724 1066 ProSiteProfiles SET domain profile. 924 1041 IPR001214 GO:0005515
Vifa2g02724 1066 CDD PWWP_AtATX3-like 242 343 - -
Vifa2g02724 1066 ProSiteProfiles Zinc finger PHD-type profile. 433 495 IPR019787 -
Vifa2g02724 1066 ProSiteProfiles PWWP domain profile. 240 309 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02724 Vifa-Chr2 750918910 750926729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02724 636 801 C2H2 Transcription Factor Family AT3G14740 34.682 9.79e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa2g02724 zf-HC5HC2H_2 6.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02724 - - aprc:113853254 1722.21