Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02723 ATGATTATCAAGCGGAACTTGAAATCTCAAATGCCGCGTTTGAAACGGTGTAGAATCGGTGACTCGGTTGGAGAAGATGAAGACTGTTCTTATGCTTCTAAGAAGAGGAAAACGAGTGGTTGTTATTATCCTTTGAGCCTTTTAGGTGATGTTGCCGCCGGTTTAATTCCGGTGAGTTTTCACGGTTTGTTGAGTGCTGGTGTTTCCGAGAGGTCGTGGTGCACGCAACCTCCGTGCTCCCCCGGTGAAGTTGAATCGAACGAGTTCTCCAAGGAGATGGTTCCGATGAAGAAAAATCAGGTTCAGCGACCGCCGCTTGTTAGAACTTCGAGAGGGCGAGTTCAGGTTCTCCCTTCTCGTTTTAACGACTCTGTTATTGATGATTGGAAAAAGGATGGGAAAACCAGCTTGCGTGATTTTGAAGTTCAAGGTGAATTTAAATGCAAGAAGGACAGGGTAGTGCCGAGAACATTTAATAACAATGTCAGAAAAGGGCGTAACAATGGGAAAATTGGTTATAAGCAACGTAAGTATTCGGCATTGTCTGAAGATGATGATTTTACCTTGAGTAGGAGGCATAAGAGTTTTGGTAGAAGGAGGGGTTCAGCTTTGGATGAAGATGAAGATGATTTGGTGATGGGTAGTGATGATATAGTTGATTTGAAGGTGAGTAATCAAGAGAAGAAAGATGGGTTGTATGGGCCAGAAAATTTTTATGCCTGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTTTTTGGCCAGCTGTTGTTATTGATCCTATGAAACAAGCACCTGAGTTGGTCCTAAGGTCTTTTATAGCGGATGCTGCATGTGTCATGTTTCTTGGCAATGCTGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATTTATGGATTATGTTGACAGGTTTCAAGAGCAGCCTGAATTGAGTAATTATAGTCCCTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCCGACCAAGGCTTTACAGAGAAGTTGTTCGATGATATAAATGCAGCCGCTGGTGCTACTGTTTATGATGATACTATTCTGAAATCCTCCTTCCGGGAGATATGTGGTTCAAACCAGTATGGAAGAGTGGGAAAATATTTTCTGAACCAAGATTTATTTGATAATAAAGACACACGATCATGTGAAGCGTGTGGATTGACTCTTTCTTACAAGATATCAAGGAAAACTAATGGTTTGACTCCTAATGGTCAACTCCTATGTAAAACATGTGCAAGGTTAACGAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGTGACCAAATTTCTAGAAACCATTTCAAGGATCTTGAAAGCACTGATTATTACTGCCCTACATGTAGAGGCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAATCAAAGACAAAAGTCAGATCAAACCGAAACAATGGGCAGCTAGTGCTTTCGAATAAGGTCACTGTTCTCTGCAATGGTGTGCAAGGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCTCTTAGCGAATGGGAACGGCACACAGGTTCCAAATTAAGAAATTGGAAAACAAGTATTATTGTGAAAGACTCTAGGCTACCTTTGGAACAATGGATGCTGCAGGTTGCCGAAGTTCATGCTAATGCTCTAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAAAAGTTGCTTACCTTCTTGAAAGAGAGGTATGAACCTGTTTATGCTAAGTGGACTACAGAGCGTTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGTATTAAATGTTAAAGACTTCACATCTTGGGTTTGTAAGACCTGCGAGACACCTAAAATCAAGCGGGAGTGTTGCCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATATTGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGAAAATGGAACCTGCATTGGGCATTCTTAGTATTCCATCAAACTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCCTGCACACAGTGCTGCAAATGCTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAGTTGCATTGTTCGAAGAAAAATGGGAAGACGATAACAAAAATGGTTTCATATTGTGCTTACCACAGAGCTCCAAATCCAGACAATGTTTTGATTTTGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTTCAAAAGAAAAAAATTGGATCAAGGTTAATCTCATCTAACAGAATAAAGCAAGAAGAGACTCCTATTGATAGCACTGAGCATGACCCGTTCTCTGCTGCTCGGTGTCAAATCTTCAAAAGAACAAATCATACCAGAAAGAGAGCTTCTGATGAAGCAGTTTTTCATCAAGCGAGGGGTCACTGCCACCATCCAAAGGATGCAATACAGAGTTTAAATGCATACAGAACAGTAAAGGAGCCTCCAGCTTTCTCGTCTTTCAGAGAACGACTTTACCACTTACAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGGGAACAAGTGAGACGCAGCATTGCTGATTTGAGGGAAGCACGCTATAGAGCAGAAGGGAAAGACTGTTATCTATTTAAGATAAGCGAAGAAGTGGTGGTTGATGCCACTGATAAAGGGAATATAGCACGACTAATCAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGTGTGTGGGAGATGATGAGAGCCGGATTGTACTCATTGCTAAGACCAACATATCTTCTGGTGACGAGCTAACTTATGACTACTTATTTGATCCTGATGAGCCAGATGAATTTAAAGTCCCCTGCATGTGTAAAGCTTCGAGTTGCAGGAAATTCATGAATTAG 3183 0.4163 MIIKRNLKSQMPRLKRCRIGDSVGEDEDCSYASKKRKTSGCYYPLSLLGDVAAGLIPVSFHGLLSAGVSERSWCTQPPCSPGEVESNEFSKEMVPMKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDDWKKDGKTSLRDFEVQGEFKCKKDRVVPRTFNNNVRKGRNNGKIGYKQRKYSALSEDDDFTLSRRHKSFGRRRGSALDEDEDDLVMGSDDIVDLKVSNQEKKDGLYGPENFYACDIVWAKAGRKEPFWPAVVIDPMKQAPELVLRSFIADAACVMFLGNAGNENQRDYAWVKHGMIFPFMDYVDRFQEQPELSNYSPSDFQMAIEEAFLADQGFTEKLFDDINAAAGATVYDDTILKSSFREICGSNQYGRVGKYFLNQDLFDNKDTRSCEACGLTLSYKISRKTNGLTPNGQLLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDQISRNHFKDLESTDYYCPTCRGKFDFELSDSEKSKTKVRSNRNNGQLVLSNKVTVLCNGVQGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWKTSIIVKDSRLPLEQWMLQVAEVHANALVSVKPKKPSLKERKQKLLTFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGVLNVKDFTSWVCKTCETPKIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSKKNGKTITKMVSYCAYHRAPNPDNVLILQTPLGVISTKSLLQKKKIGSRLISSNRIKQEETPIDSTEHDPFSAARCQIFKRTNHTRKRASDEAVFHQARGHCHHPKDAIQSLNAYRTVKEPPAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMCVGDDESRIVLIAKTNISSGDELTYDYLFDPDEPDEFKVPCMCKASSCRKFMN 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02723 1060 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1060 IPR025780 -
Vifa2g02723 1060 SUPERFAMILY SET domain 911 1057 IPR046341 -
Vifa2g02723 1060 ProSiteProfiles Post-SET domain profile. 1044 1060 IPR003616 -
Vifa2g02723 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 490 IPR013083 -
Vifa2g02723 1060 Gene3D SET domain 813 1060 IPR046341 -
Vifa2g02723 1060 SMART set_7 918 1041 IPR001214 GO:0005515
Vifa2g02723 1060 Pfam PHD-finger 435 487 IPR019787 -
Vifa2g02723 1060 FunFam Histone-lysine N-methyltransferase 893 1060 - -
Vifa2g02723 1060 CDD SET_SETD1-like 905 1056 - -
Vifa2g02723 1060 Gene3D - 235 340 - -
Vifa2g02723 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 678 IPR013083 -
Vifa2g02723 1060 ProSiteProfiles Extended PHD (ePHD) domain profile. 681 796 IPR034732 -
Vifa2g02723 1060 ProSiteProfiles SET domain profile. 918 1035 IPR001214 GO:0005515
Vifa2g02723 1060 CDD PHD_ATX3_4_5_like 629 675 IPR042011 -
Vifa2g02723 1060 Pfam PHD-zinc-finger like domain 683 795 - -
Vifa2g02723 1060 ProSiteProfiles Zinc finger PHD-type profile. 433 489 IPR019787 -
Vifa2g02723 1060 SMART PHD_3 740 796 IPR001965 -
Vifa2g02723 1060 SMART PHD_3 435 487 IPR001965 -
Vifa2g02723 1060 SMART PHD_3 629 676 IPR001965 -
Vifa2g02723 1060 FunFam Histone-lysine N-methyltransferase 679 798 - -
Vifa2g02723 1060 Pfam PHD-finger 642 676 - -
Vifa2g02723 1060 SUPERFAMILY FYVE/PHD zinc finger 628 692 IPR011011 -
Vifa2g02723 1060 SUPERFAMILY FYVE/PHD zinc finger 434 490 IPR011011 -
Vifa2g02723 1060 Pfam PWWP domain 242 334 IPR000313 -
Vifa2g02723 1060 ProSitePatterns Zinc finger PHD-type signature. 630 675 IPR019786 -
Vifa2g02723 1060 SUPERFAMILY Tudor/PWWP/MBT 233 337 - -
Vifa2g02723 1060 Pfam SET domain 929 1034 IPR001214 GO:0005515
Vifa2g02723 1060 ProSiteProfiles Zinc finger PHD-type profile. 627 678 IPR019787 -
Vifa2g02723 1060 PANTHER PHD FINGER PROTEINS 11 504 - -
Vifa2g02723 1060 CDD ePHD_ATX3_4_5_like 684 795 IPR041955 -
Vifa2g02723 1060 CDD PWWP_AtATX3-like 242 343 - -
Vifa2g02723 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 798 IPR013083 -
Vifa2g02723 1060 ProSiteProfiles PWWP domain profile. 240 309 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02723 Vifa-Chr2 750918910 750926729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02723 630 795 C2H2 Transcription Factor Family AT3G14740 34.682 1.01e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g02723 zf-HC5HC2H_2 6.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02723 - - aprc:113853254 1728.76