Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02718 ATGGACTATGGTAGGTTAGGATTATCCGACCCTGGAGGTTCGACTCCCTCCGAACCTATAATCCATCCCAAAGCAAGATCTTCCTCAAAGAAGAAAATCATTTTCTTATCACTCCTTGCTGTGTTATTCATCGTTGCCTCCGCCGTTTCCGCCGCAATGCTCACTCGAGTCCACACCCACGGCGGAAACCAGCATAAAGATCCATCTCTCCGACGTAATCCAACGCAAGCAATCTCTCGAACATGTAGCAAAACTCGTTTCCCTTCACTCTGTGAAACGTCTCTTCTGGAATATCCTGGATCCACAATCGCTACAGAGAAAGACCTTATCCACATTTCCCTCAACATGACGCTACAGCATCTCTCCAAAGCACTCTACTCCTCCGCCTCTATCTCCTCCACCGTCGGCATGAACCCTCGCATCCGCGCCGCTTATCAAGATTGTCTCGAACTTCTTGACGACTCCGTTGACGCTCTCACTCGCGCATTGACCTCCGTCGTACCTTCCTCCTCCTCCTCCAAAGGCGCCGTTAAGCCGCTTACCTCATCCGACGATGTACTCACATGGCTGAGCGCTGCACTTACAAACCAAGACACGTGTGCTGAGGGTTTTACCGACACTTCCGGTGCAGTGAAAGATCAGATGGCGAATAACATAAAGGACTTGTCGGAGCTAGTGAGTAATTGCTTAGCTATTTTCTCTAACTCCGGCGCCGGAGATGATTTCTCCGGTGTTCCTATACACAATAAGAGACGGTTAATGACAATGCCGGAAAATGATTTTCCGATATGGTTGAGAAAACGAGAGAGAAGATTGTTGGACTTGCCGGTGTCGGCGTTACAGGCTGATGTGATAGTTTCTAAAGACGGTAACGGAACGGTGAAAACTATATCGGAAGCTCTTAAAAAGATACCTGAATACGGTAACCGACGCTTCATTATCTATATCAGAGAAGGAAGGTATGAAGAAGACAATTTAAAGATTGGAAGGAAGAAAACTAATGTTATGATCATGGGGGACGGAAAGGGAAAGACTGTGATCACAGGGGGCAAAAATGTTATGCAAAATTTGACCACATTTCACACTGCTTCCTTTGCTGCTAGTGGTCCAGGTTTCATTGCAAGGGACATGACATTCGAGAACTACGCCGGACCATCAAAGCACCAAGCGGTAGCCCTCCGCGTTGGATCAGACCACGCGGTGGTCTACCGTTGCAACATCATCGGATACCAAGACACAATGTATGCACATTCCAATCGTCAATTCTACCGCGAATGTGACATATACGGCACCGTAGACTTCATATTCGGCAATGCTGCAGTTGTTTTCCAAAACTGCAGCCTCTACGCAAGAAAGCCCATGGCCCAGCAAAAGAACACCATCACAGCCCAAAACAGAAAAGACCCGAATCAGAACACTGGTATATCAATCCATAATTGTAGAATCCTAGCCACACAGGATCTAGAAGCATCCAAGGGAAACTTCACAACATATCTGGGCCGTCCATGGAAACTATACTCTAGAACTGTCTACATGTTATCATACATGGGGGATCATTTAAATCCACGTGGGTGGTTAGAATGGAACACAACTTTTGCTTTAGACACTTTGTATTATGGTGAATACATGAATTATGGCCCGGGTGGAGCTATTGGCCAACGGGTAACCTGGCCTGGTTTTCGGGTTATTACGTCCACCGTCGAAGCTAATAGATTCACGGTGGCTCAGTTCATATCGGGTTCCACATGGTTGCCGTCTACTGGAGTGGCATATGTAGCTGGCTTAAATACCTGA 1794 0.4699 MDYGRLGLSDPGGSTPSEPIIHPKARSSSKKKIIFLSLLAVLFIVASAVSAAMLTRVHTHGGNQHKDPSLRRNPTQAISRTCSKTRFPSLCETSLLEYPGSTIATEKDLIHISLNMTLQHLSKALYSSASISSTVGMNPRIRAAYQDCLELLDDSVDALTRALTSVVPSSSSSKGAVKPLTSSDDVLTWLSAALTNQDTCAEGFTDTSGAVKDQMANNIKDLSELVSNCLAIFSNSGAGDDFSGVPIHNKRRLMTMPENDFPIWLRKRERRLLDLPVSALQADVIVSKDGNGTVKTISEALKKIPEYGNRRFIIYIREGRYEEDNLKIGRKKTNVMIMGDGKGKTVITGGKNVMQNLTTFHTASFAASGPGFIARDMTFENYAGPSKHQAVALRVGSDHAVVYRCNIIGYQDTMYAHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHNCRILATQDLEASKGNFTTYLGRPWKLYSRTVYMLSYMGDHLNPRGWLEWNTTFALDTLYYGEYMNYGPGGAIGQRVTWPGFRVITSTVEANRFTVAQFISGSTWLPSTGVAYVAGLNT 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02718 597 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Vifa2g02718 597 Pfam Pectinesterase 283 580 IPR000070 GO:0030599|GO:0042545
Vifa2g02718 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 235 IPR035513 -
Vifa2g02718 597 Gene3D - 277 595 IPR012334 -
Vifa2g02718 597 SMART PMEI_2 73 232 IPR006501 GO:0004857
Vifa2g02718 597 Pfam Plant invertase/pectin methylesterase inhibitor 77 232 IPR006501 GO:0004857
Vifa2g02718 597 FunFam Pectinesterase 277 595 - -
Vifa2g02718 597 SUPERFAMILY Pectin lyase-like 278 594 IPR011050 -
Vifa2g02718 597 CDD PMEI-like_3 82 235 - -
Vifa2g02718 597 PANTHER PECTINESTERASE 44 585 - -
Vifa2g02718 597 MobiDBLite consensus disorder prediction 1 23 - -
Vifa2g02718 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 234 IPR035513 -
Vifa2g02718 597 FunFam Pectinesterase 74 236 - -
Vifa2g02718 597 NCBIfam pectinesterase inhibitor domain 56 234 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02718 Vifa-Chr2 749047624 749051623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02718 1 596 Carbohydrate Esterase AT5G53370 63.455 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02718 - - gmx:100808236 890.182