Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02713 ATGGAGTTGAATAATATTGAGTGTGTTACATCCTCAGATGGCATGGATGAAGATGAGATCCATCTGCATCATCACTCTGAGTTTTCTTCCACAAAGCATAGAAATGGTGCCGCAAATATTAATAATATTTTGGGTCCTAATGCCATTGCTCCTATAACCAGCGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCTATGTACCCTCCAATTCATCAGTGTCACAATGGTCACACACTATGTTCGACATGCAAAACACGTGTGCATAACCGATGTCCGACATGTAGACAAGAGCTTGGAGATATTAGGTGTTTGGCATTGGAGAAGGTGGCGGAATCACTCGAGTTACCGTGCAAGTACTACTCCCTTGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTCTGTAATTTTAGACCATATAGTTGTCCTTATGCTGGATCGGAGTGTTCCACTGTTGGCGATATTAGCTTCCTCGTTGCTCATTTGAGGGATGATCATAAGGTCGACATGCACACCGGATGCACGTTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCATTGCTTTGGCCAATATTTCTGCCTTCATTTCGAAGCTTTTCAGCTTGGCATGGCACCTGTTTACATGGCATTCCTTCGTTTCATGGGCGATGAGAATGAAGCTCGTAACTATAGTTATAGCCTAGAAGTTGGGGCCAATGGCAGGAAACTAATTTGGGAGGGTACACCACGAAGTGTTCGGGATAGCCACCGAAAAGTCAGGGATAGCCATGATGGTCTCATAATTCAAAGAAATATGGCACTATTTTTCTCGGGCGGGGATAGAAAGGAGCTGAAACTTAGAGTCACAGGAAGAATATGGAAGGAACAGAATCAAGATGCTGCAGTGTGCATACCTAATCTATGTAGCTGA 969 0.4324 MELNNIECVTSSDGMDEDEIHLHHHSEFSSTKHRNGAANINNILGPNAIAPITSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSTVGDISFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNQDAAVCIPNLCS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02713 322 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 40 308 - -
Vifa2g02713 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 113 IPR013083 -
Vifa2g02713 322 ProSiteProfiles Zinc finger RING-type profile. 61 97 IPR001841 -
Vifa2g02713 322 Pfam Seven in absentia protein family 103 302 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa2g02713 322 SUPERFAMILY TRAF domain-like 114 306 - -
Vifa2g02713 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 165 IPR013083 -
Vifa2g02713 322 FunFam E3 ubiquitin-protein ligase SINAT3 11 112 - -
Vifa2g02713 322 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 302 IPR008974 GO:0005515
Vifa2g02713 322 CDD Sina 175 303 - -
Vifa2g02713 322 FunFam E3 ubiquitin-protein ligase SINAT3 113 169 - -
Vifa2g02713 322 SUPERFAMILY RING/U-box 52 101 - -
Vifa2g02713 322 ProSiteProfiles Zinc finger SIAH-type profile. 114 174 IPR013010 GO:0008270
Vifa2g02713 322 FunFam E3 ubiquitin-protein ligase SINAT5-like 170 302 - -
Vifa2g02713 322 CDD RING-HC_SIAHs 59 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02713 Vifa-Chr2 746869782 746871660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02713 27 309 C3H Transcription Factor Family AT2G41980 75.265 2.37e-162 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02713 K04506 - gmx:100810573 643.269