Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02702 ATGAATACTGAGGAAGGAATGAGAAATCCTCATGACACTGAATGTACTGAAGGAGTTCAGGGTTTGAAACTCAGAGCCGTTTCTGATGAGGTGCCAATTTCCAATGGGAATGTTGTTACTGAAGAGGCTCGACATTTGAGTAGTCAAGCTGTGAATGATGGGTGTTATTTTGATATGGGAGCTGAGGAAGGAGTGAGCAGTCCTGGTAACACTAAATGTGCTGAAGGAATTCGGTGTTTGAAACGCAAAGCCTTTTCTGATGAGGTGCCGATTTCCAATGGGAATGGTGTTGCTGAGGAAGCTCGACACATGAATGATGGGGTGGTATTTGCCGTTGGAAATGGTGTTGGTGATGTGGCTGGGGTTTTGAAAAATGAAGTATTGAATAATGGGGTAAATGGAAATGGTGTATTTGAAGAGGATCGGCAATCGAAAAGTGAAGCCATGAACAAAGGGATGGTATTTGGCTATGGAAATGGAATTACTGATGTGGCTGGGGTTTTGAAAAGTGAAGTGTTGGATAATGGGTTTAATGGAAATGGTGTATTTGAAGAGAATCGACACTCAAAAAGTGAAGCAATGAACAATGGGGTGGTATTTGCCAACGGAAATGGTGTTATTGATGTGGCTGGAGTTTTGGAAAGTGAAATGTCGAGTAATGGGGTAAATGGAAATGGTGTATTTGAAGAGGATCGACACTCAAAAAGTGAAGCCTTGAATGAAGGGGTGGTATTTGCCAATGGAAATGGTATTAGTGACGTGGCTGGGGATTTGAAAAGTGAAGTATCGAATAGTGGGGTGAATGGAAATGGTGTTATTGAAGAGGGCGGAGTTTTGAAAAGTGAAGTATCGAATAGTGGGGTGAATGAAAATGGTGTTATTAAAGAGGGCGGGGTTTTGAAATGTGAACCTATTAGCAATGGGGTGCCAATTGCTGATGGGTTTGATTCTGGTGACGGGGGCTCTGGTGGGCTTACATGTCTTCAAACTTACAAGAGGCGAAAATATGATAAGTCAAGCTCAAAAGGCAAAGCTCAGGAGGATTGGAGAAAATGTGTGGAAACTGCAAGTCATATAGCAGACCAGTCTGTGAAGGAACCCCTTGATGCAACTTTAGGCAATACTGCAGATGATTGTGCCCATAGACATTGGGGGAATGATGTACTAAAGCATTTATATGAGTCATTAGGCAATGTCGATGGTGGCATAGAGGGGGGCATAGGGCAAGCACTAATTCACCATCCTCAAAGAAGTTGTGCCGCCACTTTTATGGGAACTTCTACAACTGACAAAGATGGACATGCATTCTCTTCACAATTTGACCACTTATCTCATAGACCACAGACTGAAGCTAATGGGCATGCATGTGCCATGCAAAATGGATCTTCTAGTGAACCGCATGGTGTGACTGAGAAGTGTCAGCGCGTGCTCCACGATATATTAACCTCAGAAAAATTCAATTCATTACGCAAGACTTTACTTGAAAATTTCCAAGGAATAAAGCTTGAAAGTGTATTTGATTTTAGTGTCATGAACTCAAGGATGAAGCAGAAAACTTATGAACAATCACCTGTACTTTTCTTGTCAGATTTTCAACAGGTCTGGAGAAAGCTTCAAGATGTTTGTAATGAGATCTCTGCTCTTTCTAAAAGCCTCTCCATCATGTCAACAACTTCCTACTCTCAGCTGGTTGGAGTTTCAGCGCAGAGCACATTTAAAGATGAAAAACAAGTGGAATCGGACTCATACATGAACCCGGAGCAGACAGAAGAATGCACTACCTATAAAATTTGCCGTTGCAGTCGTTGTGGAGAAAGGGCAGATGGTACAGACTGTTTGGTGTGTGATTCATGTGAGCAGGTTTACCATTTGTCCTGTATTGAGCCCGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTGCTAATTGCACCAATAGTGGCTTTGGATCTCCGCATCAGAATTGTGTAGTATGTACGAGATTGAATGACGTAATAACTCCAAAGAAAATAATTGGTGATGAAAGCCTCACTACAAATGAGGAAACACTTAATGAATTTCAAGAGAATTCAAATTGCACCTATAGGGTTCAAGTATCTAAAGATGAGGAAAAAACACTGGATTGCAAAGTGTGTGGAAATGAAGTCCTAGTTGATGGTGAAGATTTTAGAATATGTCGTCACTCTTTTTGCCCAAGTAATTACTACCATGTAAGGTGTTTGACAAGCAAGCAATTAAATTCATATGGTCGTTGGTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCCTCATCAATATAAACGACAATCAAATTGTCCTCTGTGATGGCTGTGATCACGCGTATCACATCTATTGCATAAAACCTCCTCTAGCTTCTATTCCTAAAGGGAAATGGTTTTGCAAAAAATGTGATGCTGGAATCAAGGCAATATCCCAGGCAAAAAAGGCGTATGAGAATAGCAAGCTGAGAACCGATGACAGTGTTTCAAAGCCAAAAGCTAATAATGAAAACAGTTGCAACAATAAATGTGTAGAAGAATTGGAAAGTGTTGGAGGAATGGACATGCTTTTAACTGCTGCCAATTCTCTGAATTTCGAAGATAATTTGACCGAAAACCAGTTTGAGTAG 2631 0.4105 MNTEEGMRNPHDTECTEGVQGLKLRAVSDEVPISNGNVVTEEARHLSSQAVNDGCYFDMGAEEGVSSPGNTKCAEGIRCLKRKAFSDEVPISNGNGVAEEARHMNDGVVFAVGNGVGDVAGVLKNEVLNNGVNGNGVFEEDRQSKSEAMNKGMVFGYGNGITDVAGVLKSEVLDNGFNGNGVFEENRHSKSEAMNNGVVFANGNGVIDVAGVLESEMSSNGVNGNGVFEEDRHSKSEALNEGVVFANGNGISDVAGDLKSEVSNSGVNGNGVIEEGGVLKSEVSNSGVNENGVIKEGGVLKCEPISNGVPIADGFDSGDGGSGGLTCLQTYKRRKYDKSSSKGKAQEDWRKCVETASHIADQSVKEPLDATLGNTADDCAHRHWGNDVLKHLYESLGNVDGGIEGGIGQALIHHPQRSCAATFMGTSTTDKDGHAFSSQFDHLSHRPQTEANGHACAMQNGSSSEPHGVTEKCQRVLHDILTSEKFNSLRKTLLENFQGIKLESVFDFSVMNSRMKQKTYEQSPVLFLSDFQQVWRKLQDVCNEISALSKSLSIMSTTSYSQLVGVSAQSTFKDEKQVESDSYMNPEQTEECTTYKICRCSRCGERADGTDCLVCDSCEQVYHLSCIEPAVKEIPHKSWYCANCTNSGFGSPHQNCVVCTRLNDVITPKKIIGDESLTTNEETLNEFQENSNCTYRVQVSKDEEKTLDCKVCGNEVLVDGEDFRICRHSFCPSNYYHVRCLTSKQLNSYGRWWYCPSCLCQVCLININDNQIVLCDGCDHAYHIYCIKPPLASIPKGKWFCKKCDAGIKAISQAKKAYENSKLRTDDSVSKPKANNENSCNNKCVEELESVGGMDMLLTAANSLNFEDNLTENQFE 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02702 876 ProSitePatterns Zinc finger PHD-type signature. 755 804 IPR019786 -
Vifa2g02702 876 SUPERFAMILY FYVE/PHD zinc finger 571 645 IPR011011 -
Vifa2g02702 876 SMART ring_2 709 758 IPR001841 -
Vifa2g02702 876 SMART ring_2 760 804 IPR001841 -
Vifa2g02702 876 Gene3D - 492 648 - -
Vifa2g02702 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 764 806 IPR013083 -
Vifa2g02702 876 FunFam PHD finger protein EHD3 isoform A 491 648 - -
Vifa2g02702 876 ProSiteProfiles Zinc finger PHD-type profile. 597 647 IPR019787 -
Vifa2g02702 876 Pfam PHD-finger 599 646 IPR019787 -
Vifa2g02702 876 Pfam PHD-finger 760 805 IPR019787 -
Vifa2g02702 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 763 IPR013083 -
Vifa2g02702 876 SUPERFAMILY FYVE/PHD zinc finger 759 809 IPR011011 -
Vifa2g02702 876 ProSiteProfiles Zinc finger PHD-type profile. 757 807 IPR019787 -
Vifa2g02702 876 SMART PHD_3 760 805 IPR001965 -
Vifa2g02702 876 SMART PHD_3 599 645 IPR001965 -
Vifa2g02702 876 SMART PHD_3 708 759 IPR001965 -
Vifa2g02702 876 PANTHER OS02G0192300 PROTEIN 424 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02702 Vifa-Chr2 723130558 723138224 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02702 759 823 C2H2 Transcription Factor Family AT3G01460 43.077 1.03e-12 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g02702 PHD 9.8e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02702 - - psat:127082741 1309.28