Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02701 ATGAATACTGAGGAAGGAATGAGAAATCCTCATGACACTGAATGTACTGAAGGAGTTCAGGGTTTGAAACTCAGAGCCGTTTCTGATGAGGTGCCAATTTCCAATGGGAATGTTGTTACTGAAGAGGCTCGACATTTGAGTAGTCAAGCTGTGAATGATGGGTGTTATTTTGATATGGGAGCTGAGGAAGGAGTGAGCAGTCCTGGTAACACTAAATGTGCTGAAGGAATTCGGTGTTTGAAACGCAAAGCCTTTTCTGATGAGGTGCCGATTTCCAATGGGAATGGTGTTGCTGAGGAAGCTCGACACATGAATGATGGGGTGGTATTTGCCGTTGGAAATGGTGTTGGTGATGTGGCTGGGGTTTTGAAAAATGAAGTATTGAATAATGGGGTAAATGGAAATGGTGTATTTGAAGAGGATCGGCAATCGAAAAGTGAAGCCATGAACAAAGGGATGGTATTTGGCTATGGAAATGGAATTACTGATGTGGCTGGGGTTTTGAAAAGTGAAGTGTTGGATAATGGGTTTAATGGAAATGGTGTATTTGAAGAGAATCGACACTCAAAAAGTGAAGCAATGAACAATGGGGTGGTATTTGCCAACGGAAATGGTGTTATTGATGTGGCTGGAGTTTTGGAAAGTGAAATGTCGAGTAATGGGGTAAATGGAAATGGTGTATTTGAAGAGGATCGACACTCAAAAAGTGAAGCCTTGAATGAAGGGGTGGTATTTGCCAATGGAAATGGTATTAGTGACGTGGCTGGGGATTTGAAAAGTGAAGTATCGAATAGTGGGGTGAATGGAAATGGTGTTATTGAAGAGGGCGGAGTTTTGAAAAGTGAAGTATCGAATAGTGGGGTGAATGAAAATGGTGTTATTAAAGAGGGCGGGGTTTTGAAATGTGAACCTATTAGCAATGGGGTGCCAATTGCTGATGGGTTTGATTCTGGTGACGGGGGCTCTGGTGGGCTTACATGTCTTCAAACTTACAAGAGGCGAAAATATGATAAGTCAAGCTCAAAAGGCAAAGCTCAGGAGGATTGGAGAAAATGTGTGGAAACTGCAAGTCATATAGCAGACCAGTCTGTGAAGGAACCCCTTGATGCAACTTTAGGCAATACTGCAGATGATTGTGCCCATAGACATTGGGGGAATGATGTACTAAAGCATTTATATGAGTCATTAGGCAATGTCGATGGTGGCATAGAGGGGGGCATAGGGCAAGCACTAATTCACCATCCTCAAAGAAGTTGTGCCGCCACTTTTATGCAGGGAACTTCTACAACTGACAAAGATGGACATGCATTCTCTTCACAATTTGACCACTTATCTCATAGACCACAGACTGAAGCTAATGGGCATGCATGTGCCATGCAAAATGGATCTTCTAGTGAACCGCATGGTGTGACTGAGAAGTGTCAGCGCGTGCTCCACGATATATTAACCTCAGAAAAATTCAATTCATTACGCAAGACTTTACTTGAAAATTTCCAAGGAATAAAGCTTGAAAGTGTATTTGATTTTAGTGTCATGAACTCAAGGATGAAGCAGAAAACTTATGAACAATCACCTGTACTTTTCTTGTCAGATTTTCAACAGGTCTGGAGAAAGCTTCAAGATGTTTGTAATGAGATCTCTGCTCTTTCTAAAAGCCTCTCCATCATGTCAACAACTTCCTACTCTCAGCTGGTTGGAGTTTCAGCGCAGAGCACATTTAAAGATGAAAAACAAGTGGAATCGGACTCATACATGAACCCGGAGCAGACAGAAGAATGCACTACCTATAAAATTTGCCGTTGCAGTCGTTGTGGAGAAAGGGCAGATGGTACAGACTGTTTGGTGTGTGATTCATGTGAGCAGGTTTACCATTTGTCCTGTATTGAGCCCGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTGCTAATTGCACCAATAGTGGCTTTGGATCTCCGCATCAGAATTGTGTAGTATGTACGAGATTGAATGACGTAATAACTCCAAAGAAAATAATTGGTGATGAAAGCCTCACTACAAATGAGGAAACACTTAATGAATTTCAAGAGAATTCAAATTGCACCTATAGGGTTCAAGTATCTAAAGATGAGGAAAAAACACTGGATTGCAAAGTGTGTGGAAATGAAGTCCTAGTTGATGGTGAAGATTTTAGAATATGTCGTCACTCTTTTTGCCCAAGTAATTACTACCATGTAAGGTGTTTGACAAGCAAGCAATTAAATTCATATGGTCGTTGGTGGTACTGCCCTTCTTGTTTATGCCAAGTTTGCCTCATCAATATAAACGACAATCAAATTGTCCTCTGTGATGGCTGTGATCACGCGTATCACATCTATTGCATAAAACCTCCTCTAGCTTCTATTCCTAAAGGGAAATGGTTTTGCAAAAAATGTGATGCTGGAATCAAGGCAATATCCCAGGCAAAAAAGGCGTATGAGAATAGCAAGCTGAGAACCGATGACAGTGTTTCAAAGCCAAAAGCTAATAATGAAAACAGTTGCAACAATAAATGTGTAGAAGAATTGGAAAGTGTTGGAGGAATGGACATGCTTTTAACTGCTGCCAATTCTCTGAATTTCGAAGATAATTTGACCGAAAACCAGTTTGAGTAG 2634 0.4108 MNTEEGMRNPHDTECTEGVQGLKLRAVSDEVPISNGNVVTEEARHLSSQAVNDGCYFDMGAEEGVSSPGNTKCAEGIRCLKRKAFSDEVPISNGNGVAEEARHMNDGVVFAVGNGVGDVAGVLKNEVLNNGVNGNGVFEEDRQSKSEAMNKGMVFGYGNGITDVAGVLKSEVLDNGFNGNGVFEENRHSKSEAMNNGVVFANGNGVIDVAGVLESEMSSNGVNGNGVFEEDRHSKSEALNEGVVFANGNGISDVAGDLKSEVSNSGVNGNGVIEEGGVLKSEVSNSGVNENGVIKEGGVLKCEPISNGVPIADGFDSGDGGSGGLTCLQTYKRRKYDKSSSKGKAQEDWRKCVETASHIADQSVKEPLDATLGNTADDCAHRHWGNDVLKHLYESLGNVDGGIEGGIGQALIHHPQRSCAATFMQGTSTTDKDGHAFSSQFDHLSHRPQTEANGHACAMQNGSSSEPHGVTEKCQRVLHDILTSEKFNSLRKTLLENFQGIKLESVFDFSVMNSRMKQKTYEQSPVLFLSDFQQVWRKLQDVCNEISALSKSLSIMSTTSYSQLVGVSAQSTFKDEKQVESDSYMNPEQTEECTTYKICRCSRCGERADGTDCLVCDSCEQVYHLSCIEPAVKEIPHKSWYCANCTNSGFGSPHQNCVVCTRLNDVITPKKIIGDESLTTNEETLNEFQENSNCTYRVQVSKDEEKTLDCKVCGNEVLVDGEDFRICRHSFCPSNYYHVRCLTSKQLNSYGRWWYCPSCLCQVCLININDNQIVLCDGCDHAYHIYCIKPPLASIPKGKWFCKKCDAGIKAISQAKKAYENSKLRTDDSVSKPKANNENSCNNKCVEELESVGGMDMLLTAANSLNFEDNLTENQFE 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02701 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 765 807 IPR013083 -
Vifa2g02701 877 SUPERFAMILY FYVE/PHD zinc finger 760 810 IPR011011 -
Vifa2g02701 877 SMART PHD_3 600 646 IPR001965 -
Vifa2g02701 877 SMART PHD_3 761 806 IPR001965 -
Vifa2g02701 877 SMART PHD_3 709 760 IPR001965 -
Vifa2g02701 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 764 IPR013083 -
Vifa2g02701 877 SMART ring_2 710 759 IPR001841 -
Vifa2g02701 877 SMART ring_2 761 805 IPR001841 -
Vifa2g02701 877 FunFam PHD finger protein EHD3 isoform A 492 649 - -
Vifa2g02701 877 ProSitePatterns Zinc finger PHD-type signature. 756 805 IPR019786 -
Vifa2g02701 877 ProSiteProfiles Zinc finger PHD-type profile. 598 648 IPR019787 -
Vifa2g02701 877 Gene3D - 493 649 - -
Vifa2g02701 877 PANTHER OS02G0192300 PROTEIN 424 542 - -
Vifa2g02701 877 SUPERFAMILY FYVE/PHD zinc finger 572 646 IPR011011 -
Vifa2g02701 877 ProSiteProfiles Zinc finger PHD-type profile. 758 808 IPR019787 -
Vifa2g02701 877 Pfam PHD-finger 761 806 IPR019787 -
Vifa2g02701 877 Pfam PHD-finger 600 647 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02701 Vifa-Chr2 723130558 723138224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02701 760 824 C2H2 Transcription Factor Family AT3G01460 43.077 1.03e-12 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa2g02701 PHD 9.8e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02701 - - psat:127082741 1305.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02701 2 723130558 723138224 Vifa2g02701 2 723130558 723138224 ECH