Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02700 ATGCCACCGCGGCGATGCGCAACTTACGCCGGTAGCGATTACGACGATGACGACGACGACGATATCCTCACGGCGAGGATTTCGCGGTGTCTCTCTTGCGACGAGAATTACGATCCCGACGAAGCCGGTACCTGCAAAGAATGCTACGAAGAAGCGAACGAAACCGAGGAGGAACTCAAACGTCAGATCCAAGATCTTAAATCCAAAGTCTCATTCCTTACTCTCGCTTCTCCTCTTGATTCTCCCTCTACGACTGATCTCGTTCTCCTTCCGTCTGCTGATGCTTTCTCGCCGTCCATTCCTGCTCACAAGGCCGTTCTCGTTAGTCGCTCTCCAGTCTTCAGAGCCATGCTTGAGCACGATATGGATGAAAGCCGGAGTGGCACCATCAAGATTGCTGAAGTATCATACGACGCCCTTCGTGCTTTTGTTAACTACCTATACACTGCTGAAGCATTCCTCGATAACCAAATGGCCTGTAACCTTTTAGTTTTAGCAGAAAAATATCAGGTGAAGCATCTTAAAGCATATTGTGAGAAGTATTTGATCTCCAAACTGAATTGGGAGAAAGCTGTTGTGAACTTTGCTTTTGCACATCAACACAATGCCAACCAATTGCAAGATGCAGCCTTGGCAGTGATCATGGAGAACATGGACAACCTCACTAAAAATGAAGATTATATAGAGTTAGTGGACAGTAATCCTCGTCTTGTTGTGGAAATATATGAAGCATATCTTGGCAAACAGGTGAATACAGCAGCCGCGCACTGTTGTGTAAATATATGA 786 0.4618 MPPRRCATYAGSDYDDDDDDDILTARISRCLSCDENYDPDEAGTCKECYEEANETEEELKRQIQDLKSKVSFLTLASPLDSPSTTDLVLLPSADAFSPSIPAHKAVLVSRSPVFRAMLEHDMDESRSGTIKIAEVSYDALRAFVNYLYTAEAFLDNQMACNLLVLAEKYQVKHLKAYCEKYLISKLNWEKAVVNFAFAHQHNANQLQDAALAVIMENMDNLTKNEDYIELVDSNPRLVVEIYEAYLGKQVNTAAAHCCVNI 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02700 261 FunFam BTB/POZ domain-containing protein 188 259 - -
Vifa2g02700 261 Gene3D - 188 257 - -
Vifa2g02700 261 Gene3D Potassium Channel Kv1.1; Chain A 52 187 IPR011333 -
Vifa2g02700 261 CDD BTB_POZ_ZBTB_KLHL-like 99 169 - -
Vifa2g02700 261 Coils Coil 45 76 - -
Vifa2g02700 261 ProSiteProfiles BTB domain profile. 85 156 IPR000210 GO:0005515
Vifa2g02700 261 PANTHER SPECKLE-TYPE POZ PROTEIN 42 252 - -
Vifa2g02700 261 SMART BTB_4 85 186 IPR000210 GO:0005515
Vifa2g02700 261 Pfam BTB/POZ domain 80 185 IPR000210 GO:0005515
Vifa2g02700 261 SUPERFAMILY POZ domain 79 184 IPR011333 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa2g02700 BTB 2.8e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02700 K10523 - gmx:100794118 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02700 2 721918020 721920717 Vifa2g02700 2 721918020 721920717 ECH