Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02697 ATGCAAAAAATATCTCACGACGGCGGCTCCGGTCGCCGGACGGTGGTGGTGGGAGTCAAAATGGATTCTCCAAGTAAAGAGCTTCTCACTTGGGCTTTAGTTAAAGTTGCTCAACCGGGTGATCTCGTTGTTGCTCTACATGTTCTTGGTACTCATGAAATTATGAATGGAGATGGAAAATCGTCGTTGCTTTCTCTTGTTAAAGCGTTTGACTCTGTTCTTAATGTTTATGAAGGGTTCTGTAATTTGAAGCAGGTGGATCTTAAGCTTAAAATTTGCCGTGGAACATCGGTGAAGAAAATTTTGGTGAGAGAAGCAAATGTTTATTGTGCAACTCATGTTATTGTTGGGAGTGTTCATGGCTTCCATAGAATTCGAACTTCTAGCTCTGTAGCTAAGTACTGTGCTGGAAAGATAGGTCATGATTGTTGTGTTCTTGCTGTTAATAATGGGAAAGTTGTGTTTAAGCGCGGTAGATTGGAAGAATCAAGTGTTGTTGATGTACAAGGGTTTGATTGTCATCGCGGAGATGGTTTGCTTGGTTCGATTCGATCGACACTCGGTAGTAATACGAAAGTATCAAATGATGATGCTGGTAAGGGAACCAAACGGGTTTCGGATCATAGTTTAGGTAAGATTTTACTTGATTCTACAGAGAAAGTAAGAGATCGGAGTTGTTCGATTTGCGGTGCAATGGAAGATACTTCTTGTCATCAATGTGGAGAAGAGCCTTCAAGAGAATCTGAAGGCTATTCTTCTCGTGATGGTAACAATGAGAATTCTTTGGCAATAGTGCCTGTTCTGACCACTGATGCGGGACAACTGGAATTGAAACCCGGTTGGCCGCTACTTCACCGGAAGATCTTATCCGAAAGACAATTACCTGTGAAACCATTCAAGCGCAACCAGACCTCTGTCGTCCAATGGGCAATGAGCTTGCCGAATAGAAGTGTATCGAATGGTGGTGTTGATCATGATAAACAGGTTAGCATTTTTGATCAAGGTGATCAATCGGCGGCATTAAATAGTGAAAGCGGCGCTCTTGTTCCCGTAGATTCGGTAATAGGGAAAGCATATTCATTACCTGAATGCAGTTTAAGAATCATTCCTAAAGAATTGGAGGGCCTTACTGAGAAATACTCATCAACTTGTAGATTGTTTGAGTACCAAGAACTTGTAACGGCAACATCAAATTTTTTACCTGAAAACTTGATCGGTAAAGGAGGAAGTAGTTTGGTTTATCGAGGCTGCCTTTGCGATGGCAAGGAACTTGCTGTCAAGATCTTAAAGCCTTCTTATGATGTTTTGAAAGAGTTTCTTTTGGAAATCGAAATCATAACTACATTGCATCACAAAAACATTATTACACTCCTTGGATTCTGCTTCGAAAACGGAAAGCTTCTTCTTGTCTACGATTTCTTATCACGAGGAAGCCTTGAAGAGAACATTCACGGTGTTGCCGAGGCTTTAGATTACCTGCATTGTAAAAATGATCATCCTGTGATCCATCGGGATGTAAAATCCTCTAATGTATTACTATCTGAAGATTTTGAACCGCGGTTATCTGATTTTGGATTGGCTACATGGGCGTCAACCTCATCGTCATCATATATAACGTGCACGGATGTTGCTGGAACATTCGGTTATATGGCTCCTGAATACTTCATGTACGGGAAAGTAAGCGATAAGATCGATGTCTATGCATTTGGTGTCGTGCTTCTTGAACTTCTTTCCGGGAGAAAGCCCATAAGTGTCGATTATCCAAAAGGTCAACAGAATCTTGTTATGTGGGCAACTCCACTTCTAACTGATGGAAAAGTGTCAGAATTGTTAGATCCTAGTTTGGGTGATAAGTATGATGATGAGGAGATGGAAAGGATGGTTTTAGCAGCCACTCTTTGCATCAAACGTGCTCCAAAAGCTAGGCCTCAAATGAGCATTGTATCAAAGCTCCTTCATGGAGATACTGATGCAGTCAAGTGGGCAAAGTTAGAAGTCAATGCTTTGGAAGCGCGCGAAAAGCTCGAAGACGAAGAATGTCCACCTAGTAATCTACTAAAGTCACATATTAATCTTGCACTGCTTGATGTGGAAGATGACTCACTCTCCATGTCTAGTGTTGAGCAAAGTGTGTCATTAGAGGAATACTTGAGAGGAAGATGGAGTAGAGCATCAAGTTTTGACTGA 2187 0.4147 MQKISHDGGSGRRTVVVGVKMDSPSKELLTWALVKVAQPGDLVVALHVLGTHEIMNGDGKSSLLSLVKAFDSVLNVYEGFCNLKQVDLKLKICRGTSVKKILVREANVYCATHVIVGSVHGFHRIRTSSSVAKYCAGKIGHDCCVLAVNNGKVVFKRGRLEESSVVDVQGFDCHRGDGLLGSIRSTLGSNTKVSNDDAGKGTKRVSDHSLGKILLDSTEKVRDRSCSICGAMEDTSCHQCGEEPSRESEGYSSRDGNNENSLAIVPVLTTDAGQLELKPGWPLLHRKILSERQLPVKPFKRNQTSVVQWAMSLPNRSVSNGGVDHDKQVSIFDQGDQSAALNSESGALVPVDSVIGKAYSLPECSLRIIPKELEGLTEKYSSTCRLFEYQELVTATSNFLPENLIGKGGSSLVYRGCLCDGKELAVKILKPSYDVLKEFLLEIEIITTLHHKNIITLLGFCFENGKLLLVYDFLSRGSLEENIHGVAEALDYLHCKNDHPVIHRDVKSSNVLLSEDFEPRLSDFGLATWASTSSSSYITCTDVAGTFGYMAPEYFMYGKVSDKIDVYAFGVVLLELLSGRKPISVDYPKGQQNLVMWATPLLTDGKVSELLDPSLGDKYDDEEMERMVLAATLCIKRAPKARPQMSIVSKLLHGDTDAVKWAKLEVNALEAREKLEDEECPPSNLLKSHINLALLDVEDDSLSMSSVEQSVSLEEYLRGRWSRASSFD 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02697 728 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 148 - -
Vifa2g02697 728 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 368 473 - -
Vifa2g02697 728 Gene3D Transferase(Phosphotransferase) domain 1 474 670 - -
Vifa2g02697 728 PANTHER OS08G0249100 PROTEIN 235 662 IPR046958 -
Vifa2g02697 728 Pfam Universal stress protein family 12 139 IPR006016 -
Vifa2g02697 728 FunFam Putative receptor-like serine/threonine-protein kinase 474 668 - -
Vifa2g02697 728 ProSiteProfiles Protein kinase domain profile. 399 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02697 728 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Vifa2g02697 728 MobiDBLite consensus disorder prediction 239 253 - -
Vifa2g02697 728 ProSitePatterns Protein kinases ATP-binding region signature. 405 427 IPR017441 GO:0005524
Vifa2g02697 728 SMART serkin_6 399 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02697 728 SUPERFAMILY Protein kinase-like (PK-like) 380 652 IPR011009 -
Vifa2g02697 728 MobiDBLite consensus disorder prediction 236 258 - -
Vifa2g02697 728 Gene3D Phosphorylase Kinase; domain 1 369 473 - -
Vifa2g02697 728 Gene3D HUPs 12 150 IPR014729 -
Vifa2g02697 728 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 12 149 - -
Vifa2g02697 728 Pfam Protein kinase domain 403 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02697 Vifa-Chr2 721105098 721108086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02697 387 652 Trihelix Transcription Factor Family AT5G38560 43.599 5.98e-67 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vifa2g02697 Pkinase 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02697 - - pcin:129303222 902.508