Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02694 ATGGGCTCTTGTGGTGAACCTGCAATTGTTGCTGATCCTGTTGGATTGTCTGTAATTGAGCAGCAGCAGCCGTTGAACTCGGGGTTACCGGAGTCGTGTTTGGATGATCCTTGTAATGTTTTAGACCTTGATGGTATGGGGGATGGTTTTATTGGGGAGGGTGGTGTAGGTTGTTCTGGAAGCTTTGTTGATGTTGTTAATACTGAGGAGTCTGGAGATGGTTTGAGAAATGAATGTGAGATTGATGATTTATTACAATTGGAGATAGGTGCTGAAGATGGTTGTCGGAATAGTTTGGGGGTTTGTTCTGAGGATATTGACGTTTCTGATTTTATAAGTGATGGATTGCACTCGGAGGGAAATTTTAAAGATGAAGGTAAGGTCGACCTGCCAAATGATTTGCAGACGGATTGTGGTGAACAGGGTGAGCAGAAGGATGAGAAGAGCGTTGTTTTATCGATGGCAGGAGATAATTCGGAAGTTGTGGAAGACAAGGATGATGGTGCTGATTTGATAGCAAGGGCTGTCAGCTGTGTGCTTGGCACCGGTCATTCTGACGTTTCCCTTGAGTCGGATTTCATGAGAGATTGGCTAGTTGATTGCATCCAGAAAAATGAGCCAGAGGGGCTTATGAGAAATGGGATGGAAGCCAATTGCTGGCAGATATCTTCTTCGTTGGACGTGGAAGAAGTGCCGTCAGGTGCTTTACTTATAGACACAAAACTAGAAAGCACAAGTGATAAGCTGCACGATCAAAAAGATGGTGTGGATTGTGACAGTGCCTGCGAAGAAAAGATAAGAGCCACTGTTGTTAAAGAAATCACTGATGATTCACATGTAAAATCATCACCCTCACCTGATTTTCGTAACAACTTGAGGAATTCACCCGTAGTTGATTCACTATGTCAGCCTGCCTTGTTGGATCCAGGGAGTGAATTGAAGAATGGCATATTGCAAATAGAAGATAATTTCTGCGTATTGAAGGATAATTCTGCAGATGGAACTGGTAACTCTACCATTCAGGAATCATTTTATCCAGAATCAGGCCAGTCCTCTTCTGTTTTAATCACCAGTACCTCTCCAAAGGATGTGCCAGATCTTCTTTCCAAGGGTAACAGTGTTTCCATCAAGGATACTTGTCCTGTAGACAATCCTGGACAGACAAATAATGATGGACAAGAAGCTGTTGAAGTTGATTATATCACTGAAAGCACACTGTTACCTTCTCAAAGTAACAGTCAAACAACCAAATTTGGTCGTAATACACAAACCAGAAAGGCTTCTAGAAAATCCACAAACAAAGCCAGTGCAACACATTCAAGCGGGGGTATGAAGTTAAATTTAGAGGCTGTTAGGAAGAAAAGAAGTTGTTTATCCAAACCAGCTAGATCATCTGCCTGGGGATTGCTGGGGAATGTTGAACAGTTTTTTCAGTATGAAAATGAGCTTGATGTTAATGAAGCCATGTGCCAGGATGTTGGAAAGGCTAGAAACAACTGTCAAGGTGGGAAAACAACTAAGAATGATACAATTTCTAGCTCATTAAGTTCAATTCCAAAGGATAATGTTTCAACTTCAACTACTCGTTTTCGTCTGAAGATCAAGTTTGGAAAAGAAAATGATTTACCGGCGGCTTCTGCTTCCTACAAGGGGCCTGATTCAGGTTCTCAGAAAGTAACCAGCAATTCTGCAGATAAACTTTCTGTAGTGTTGGCATTAAACAGTATAGAATCATTCAGAAAAGACCCAGACAAGGATCCTGTGGTTCTAAATGGACACACTGTAAATAGCCAATTAGAAAATTCTAAAATAACAGAGAAGTCAGAAGGGGATGCAGAGGAACCATGTCACGCAGTTCCTCCAGAGACAGTGGTTGAAGTGTTAGTTAAGCCAATTAATAATTCAGCTGTAGATCCTGGAACATCACCCGATTCAGAAGTTATTGATTCAATTCCTGAAGTCCAGGCTGGAGAAAGACATGAAGATGTACATCTTGATGTGTTAGGTTCTTCTAACGAGTTAAATTCTAATTTGGATGTTACCTTCCGGAAGAAAGGGAAGAAGAAAGACAAGCTTATTGGTTCAGGCAATTGTATCACCGAGGATGGATCACATGGTCAACCAGGTAATAATGGAGCTATGCATTCAAAGAATCATAGACATAAGAACTGTAGTGACGTGGTTAGCTCTCTAGAATTCTCTACTTCCACCGAGCTAAGCAAATCTATGAAGAGTAAAGAATTGGCTGCAGAATCATTGCCCCTTTCTGGGGAGACTGTACTTGGAGGTTCCGCCAAGGCTTTGAAAGCTAAAAGTCACGTGACAGTTGGCGAAACATCTGGTGGTCATGAATTTTCTAAATTCCAGGGTTCCGAGGATTTGCCGTCTTCTACAAGACCTTTGGGTCGTAAACTACCTAGAAGTCTTGAACCTACTAGTAAATTTAGCAAGGAAAAAACCAATGCTTCTGACTTGACAAGCAGGAAAAAGACTACTACTAGACGCAAGGAGAAACAGAAAGAGCCAGTTAACAAAAGTGAAGTCAAGGGAAAGGGTCTCTCTCTCAAAGTTACACATGAAGTGGAAGATTGCCCTCATCCAGCAGATGTAGATGGAAATCATAAGTTGGGCGCCGTTGTAAAAATTAATCCCAGTGACAACAGCAGAGTATCAGTCAATGCAGACATCATGCCTGGTTCGGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGCCACAAGTGGCGGCGTATTCCAGCTCTGCTTGCAGACCGGATTGATGAAACTAACTGCACCTGGACTTGCAAAGACAGCGGTGATAAAGCTTTTGCTGACTGTGCTATTCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAATTAGGATTATCATATGCATCTGGTGAAGAAGATGTACGAGACGACTCCAAAAATTATAAGGAATTGGAATATCGACTACCAATGGTTTCCCAAGGGTCATCTTTCACCCACATTTCCACCAACGAGTTTCTGCACCGCAAACCGAAAACTCAGACTATTGACGAGGTAATGGTTTGCCATTGCAAGCCACCTCCAGAAGGCAAGTTGGGATGTGGGGATGAATGTCTAAACCGGGTGCTTAACATTGAATGTGTGCCAGGAACTTGCCCATGCGGGGACCGTTGTTCTAATCAGCAGTTCCAAAATCGCAAGTATTCCAGACTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGACTGAAGGCACTTGAGCGGGTAGCCAAAGGCCACTTTATTATTGAATACGTTGGAGAGGTCCTTGACACACATGCATATGAGGCACGTCAAAAAGAGTATGCTTTGAAGGGTCATAGGCATTTCTATTTTATGACCTTGAACGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAATTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAACTGTCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGATTGTTTGCATTGCGGCATATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTTTGGTGCTGCTGCCAAAAAATGTTATTGTGGGTCACCTCATTGTCGAGGTTATATAGGCGGTGGTGATCCACTTAATGATGGGCTTATAGTTCAAGGCGATTCAGATGATGAATTTCCAGAACCATTGATGCTCACTGAAAATGGTGAAGTTGAGAACAGCACACCTATGCCCAATTACTATGATAATGTTGATACAGTGTCTTCTAGGCATTTATTAACAGACATGGATGTATTGGACAAGTCTACAACTGCTATATATGCAGATGGTTCTCCGGAGAAAGATAGTTCTATGAACCATGCCTCTGCTGTTTCCCTGTTGCACAGTTCAGTTGAAGTGGAAGACTCAAAAGGCAGTTTACCATCTTCTGATCGAATAGAAGAAATGTCTCAACAAATGGAGGATACAACAAGCAAACCCATGCCAGCTGTCAGCGAAGTGTTGTCGAATTCTACTGATAGTAGAAAATCCAAGTTTGAAATGGTTGAAGGCAGAAATGGTTTTTCACAATCACATCTGCCTGTGAAAACTCCTCAAAGAAGTGCTTCTGGTAAAAAGGCTAAAGTCAGTGCTAATGCTGCAAATGCCCTTACAGCTGAGGTGACAGTCAATCGATTGCCAGTGTCATCTATCAAACACAAAAAAATAGTCGAAGGTTCTTCCAATGCACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTGAAACTTTTGCTTCTCACCGTAGCTTCAGGTGATAGAATTAATGGTGAAGCAATTCAGAGCAATCGAGATCTTTCCATGATCCTTGACGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATGTAATTTGTAAAAATGGTTTACAGATGTTGCATAAGATCTTGAAGCAGTACAGGCAAGACTTTAAAAAAATTCCAATACTTCGAAAGCTTCTTAAGGTCTTAGAGTACCTGGCAGCAGGCAAGGTTTTGACACCGGAACATATCAAGAGTGGCCCTCCTTGTCGTGGAATGGAGAGTTTTAGGGAATCAATGCTGTCTCTGACAGAGCACGATGACAAACAGGTTCATCAAATTGCTCGAAGCTTTCGAGACAGATGGATTCCAAGACATAGCAGAAAACGTGGCTATATGGACAGGGATGATAATAGGGAATCTCACAGAAATTTCAACAGTAACAGATTTTCAGTATCTCATAATCATAGGCAAGAGCGATTAAGACCTAAGGAAGGAATTGATTGTGGTCAGCAGTCAAATCCTGCGACAACTTCAACTTCAGTAGATGCTGGTGCCCAGGAGAGTTGCTCTACACTGTCTTTGGATGGAGTTGAGATCAAAGGGGAGAAAAAACGCAAGCGCAAAAGCCGATGGGATCAACCGGCCGAACCGAATTCATATTCTGAAGCTGTTATTGGCTCTACCAATGAAAGCCAGAGCATTAATGAAGAAATTCCACCAGGATTTTCATGTCCAATCCGGTCATTAAACAGTGCACTAAACTCTGGTGGTCCTGTTTTGTCAAATGCAAGTCATTCTGGATGGCCCTCTAGTTTGGTTACTGGTCAGCCAAAACAGAAATTCAATTCTCGTTTGCCTGTTTCATATGGAATGCCATGGTATGTTGCCCAGCAATACGGAACTCCTCATGCTGAAATCAAAGGGTGTTGGGTCACTGCTCCTGGCGTGCCTTTCAACCCATTTCCTCCATTACCCCCACATCCACGGGAAATCAAAGACTGTCAGCCTTCTAATACTAAGGGCATGGAAGTTGATCAACCTGCTGAAATTAAGCTACGGGAAACTGATGGTCTGGTTAATTGTTGCTCAGAATCAGATGATATGACTCCCAGCACAACTGGTGCTAAGTCTGAAGACACAAACCTTGAATGCGGGGATGATAAACACGACCCCAAGCGATTGAAGGGTGACTCCAATGATTTGGGAAAGGATTACTTTAGACAGCAGAAATGGAACAATTCAAAAATACATCGAACATGGTTCAAGAGGAATGCAGGGAAATGTAATGGGAACAACTCTAGTGGTGTTGTGTGCAGTGTAGATGTAGGAGATGTATCAAAAGAATCAAAAGTTAATAGTTATTCAGAGGATGCAGTAGAGATGAGACAGGTGGAAAATAATATTTATTAG 5772 0.422 MGSCGEPAIVADPVGLSVIEQQQPLNSGLPESCLDDPCNVLDLDGMGDGFIGEGGVGCSGSFVDVVNTEESGDGLRNECEIDDLLQLEIGAEDGCRNSLGVCSEDIDVSDFISDGLHSEGNFKDEGKVDLPNDLQTDCGEQGEQKDEKSVVLSMAGDNSEVVEDKDDGADLIARAVSCVLGTGHSDVSLESDFMRDWLVDCIQKNEPEGLMRNGMEANCWQISSSLDVEEVPSGALLIDTKLESTSDKLHDQKDGVDCDSACEEKIRATVVKEITDDSHVKSSPSPDFRNNLRNSPVVDSLCQPALLDPGSELKNGILQIEDNFCVLKDNSADGTGNSTIQESFYPESGQSSSVLITSTSPKDVPDLLSKGNSVSIKDTCPVDNPGQTNNDGQEAVEVDYITESTLLPSQSNSQTTKFGRNTQTRKASRKSTNKASATHSSGGMKLNLEAVRKKRSCLSKPARSSAWGLLGNVEQFFQYENELDVNEAMCQDVGKARNNCQGGKTTKNDTISSSLSSIPKDNVSTSTTRFRLKIKFGKENDLPAASASYKGPDSGSQKVTSNSADKLSVVLALNSIESFRKDPDKDPVVLNGHTVNSQLENSKITEKSEGDAEEPCHAVPPETVVEVLVKPINNSAVDPGTSPDSEVIDSIPEVQAGERHEDVHLDVLGSSNELNSNLDVTFRKKGKKKDKLIGSGNCITEDGSHGQPGNNGAMHSKNHRHKNCSDVVSSLEFSTSTELSKSMKSKELAAESLPLSGETVLGGSAKALKAKSHVTVGETSGGHEFSKFQGSEDLPSSTRPLGRKLPRSLEPTSKFSKEKTNASDLTSRKKTTTRRKEKQKEPVNKSEVKGKGLSLKVTHEVEDCPHPADVDGNHKLGAVVKINPSDNSRVSVNADIMPGSGLGEQPQSPRNAWVSCDDCHKWRRIPALLADRIDETNCTWTCKDSGDKAFADCAIPQEKSNAEINAELGLSYASGEEDVRDDSKNYKELEYRLPMVSQGSSFTHISTNEFLHRKPKTQTIDEVMVCHCKPPPEGKLGCGDECLNRVLNIECVPGTCPCGDRCSNQQFQNRKYSRLKWFKCGKKGYGLKALERVAKGHFIIEYVGEVLDTHAYEARQKEYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRHIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNDGLIVQGDSDDEFPEPLMLTENGEVENSTPMPNYYDNVDTVSSRHLLTDMDVLDKSTTAIYADGSPEKDSSMNHASAVSLLHSSVEVEDSKGSLPSSDRIEEMSQQMEDTTSKPMPAVSEVLSNSTDSRKSKFEMVEGRNGFSQSHLPVKTPQRSASGKKAKVSANAANALTAEVTVNRLPVSSIKHKKIVEGSSNARFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRINGEAIQSNRDLSMILDALLKTKSRAVLNDVICKNGLQMLHKILKQYRQDFKKIPILRKLLKVLEYLAAGKVLTPEHIKSGPPCRGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRHSRKRGYMDRDDNRESHRNFNSNRFSVSHNHRQERLRPKEGIDCGQQSNPATTSTSVDAGAQESCSTLSLDGVEIKGEKKRKRKSRWDQPAEPNSYSEAVIGSTNESQSINEEIPPGFSCPIRSLNSALNSGGPVLSNASHSGWPSSLVTGQPKQKFNSRLPVSYGMPWYVAQQYGTPHAEIKGCWVTAPGVPFNPFPPLPPHPREIKDCQPSNTKGMEVDQPAEIKLRETDGLVNCCSESDDMTPSTTGAKSEDTNLECGDDKHDPKRLKGDSNDLGKDYFRQQKWNNSKIHRTWFKRNAGKCNGNNSSGVVCSVDVGDVSKESKVNSYSEDAVEMRQVENNIY 1923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1816 1855 - -
Vifa2g02694 1923 CDD SET_SETD2 1072 1214 IPR044437 GO:0010452|GO:0046975
Vifa2g02694 1923 ProSiteProfiles Post-SET domain profile. 1198 1214 IPR003616 -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 405 444 - -
Vifa2g02694 1923 Gene3D SET domain 970 1220 IPR046341 -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 694 720 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1654 1693 - -
Vifa2g02694 1923 SUPERFAMILY SET domain 1000 1211 IPR046341 -
Vifa2g02694 1923 FunFam Histone-lysine N-methyltransferase 972 1229 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 700 714 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 775 852 - -
Vifa2g02694 1923 Gene3D - 903 966 - -
Vifa2g02694 1923 SMART PostSET_3 1198 1214 IPR003616 -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1834 1855 - -
Vifa2g02694 1923 ProSiteProfiles SET domain profile. 1073 1190 IPR001214 GO:0005515
Vifa2g02694 1923 ProSiteProfiles AWS domain profile. 1021 1071 IPR006560 GO:0005634|GO:0042054
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1816 1833 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1364 1380 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1584 1641 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 821 852 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1312 1326 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1359 1380 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 543 562 - -
Vifa2g02694 1923 Pfam AWS domain 1036 1069 IPR006560 GO:0005634|GO:0042054
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 782 796 - -
Vifa2g02694 1923 PANTHER SET DOMAIN PROTEINS 430 1671 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1304 1334 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1623 1641 - -
Vifa2g02694 1923 SMART set_7 1073 1196 IPR001214 GO:0005515
Vifa2g02694 1923 SMART shorttest3 1021 1072 IPR006560 GO:0005634|GO:0042054
Vifa2g02694 1923 FunFam Histone-lysine N-methyltransferase 905 966 - -
Vifa2g02694 1923 Pfam SET domain 1084 1190 IPR001214 GO:0005515
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 1668 1692 - -
Vifa2g02694 1923 MobiDBLite consensus disorder prediction 405 443 - -
Vifa2g02694 1923 Pfam CW-type Zinc Finger 913 959 IPR011124 GO:0008270
Vifa2g02694 1923 ProSiteProfiles Zinc finger CW-type profile. 907 961 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02694 Vifa-Chr2 720858167 720870695 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02694 1045 1214 Su(var)3-9 homologs AT1G73100 35.294 4.69e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa2g02694 SET 2.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02694 - - mtr:25489708 2574.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02694 2 720858167 720870695 Vifa2g02694 2 720858167 720870695 ECH