Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02677 ATGATTATGAACTTCGATCGTTTTTCGGGACTACCTGATAACGGAACATTCACTATCGGCTTCACTCCATCAGACACTGATAATCGATTATTCACGTTAGGCATTTGGTTTGCTAGCCTTCCAGGAGATCGAACTTTCGTTTGGTCACCCAATAGAAACTCACCTACATCTCAAGAAGCAATTTTGGAGCTTGACACAACAGGAAACCTCGTCCTCGTCGACAAAAAAGTCACCATATGGGCCTCAAACACATCAAATGCTAATGTAGAATCAGCAACCATGTCAGAATCTGGTAACTTCATCCTTCACAGCACAAACAACCACCCTATATGGCAGAGTTTTTCTCAACCTTCAAACACACTTCTCCCAAACCAGCCTCTAACAGTTTCTTCAGAATTAACATCATCAAAATCCTCATCTCATGGTGGCTACTATGCTCTCAAAATGCTTCAGCAACCAACTTCTTTAAGTCTTGCACTAACTTACAATCTTCCAGAAAGTTACCAAACTTTTGATGAAAATGAATCATATGCAAACTATTCTTATTGGCAAGGTCCTGATATTTCCAATGTAACCGGAGAAGTTATCGCGGTTTTAGATCAAGCCGGAAGCTTTGGAATTGTATATGGAAATTCATCTGATGGTGCAGTTTATGTTTATAAGAATGATAATGATGATGCAGGTTTAGCTTCTGCAATTCATCAATCTACACCGTTAACCGTTCTTAGGAGACTGACACTCGAAGAGAATGGAAATCTGAGGTTATACCGATGGGAAGACGTAAATGGATTGAAACAATGGGTGTCACAGTGGGCTGCAGTTTCAAATCCATGTGATATTGGTGGAATTTGTGGTAATGGAGTATGTAAATTGGATAAAACTAAGACTAATGCTTCTTGCACTTGTTTACCAGGAACTTCTAAACTAGGAAGAGATGGACAATGTTATGAGAATTCATCTCTGGTTGGAAAATGTACTAATGGAAAAAACGAAAACAAGACATCGAGTTTTAGAATTTCGACAGTGCAACAAACTAATTATTATTTTTCTGAATCTTCAATAATAGCTAATTATAGTGAGAGTGATGTTTCTTCTGTATCAAAATGCGGCGATGCATGTTTGTCCGATTGTGATTGTGTTGCTTCTGTTTATGGACTAAATGAAGAAAGACCTTTTTGTTGGGTGTTGAGGAGTTTAAGTTTCGGCGGTTTTGAAGATACGAGCTCTACTTTGTTTGTGAAGGTTCGAGCAAATAGTTCATGGACACCAGAAGGACAAGAGGGAAGGTCTAATAACAGTTCTTCTGATGGAATGGGGAGTGCTAAGGAAAAGGCTGTGATTATTCCAATTGTTCTAGGCATGATAGTTCTCATTATTTTACTCACTATGTTACTGTATTACAGTGTTCATAGAAAAAGAACTTTGAAAAGAGAGATGGAATGTTCATTGGTCTTATCAGGTGCTCCAGTGAATTTTACTTACCGCGCTTTGCAGATCAGGACAAGTAACTTTTCGCAGCTTCTAGGAACAGGTGGATTTGGAAGTGTGTATAAAGGAAGCTTAGGAGATGGTACCTTAGTCGCGGTGAAGAAACTTGATAAGATTTTGCCTCATGGAGAGAAAGAATTTATCACCGAAGTAAACACGATTGGCTCAATGCATCATATGAATTTGGTTCGTTTATGTGGTTTTTGTTCTGAGGGACCTCAGAGGCTTTTAGTTTATGAGTTCATGAAGAATGGTTCATTGGATCAGTGGATCTTCCCTTCGATTCGAGGACCAGATAGATTGCTCGATTGGCAAACTCGTTTTGATATAGCCAAAAATACTGCACAAGGGATTGCATACTTTCATGAGCAGTGTAGAAACAAGATAATACATTGTGACATCAAGCCAGAAAATATATTGTTAGATGAAAACTTTTGTCCCAAGGTATCTGATTTTGGACTTGCTAAATTGATGGCAAGGGAACATTCTCATGTGGTAACAATGGTAAGAGGCACTAGAGGCTATTTGGCACCAGAATGGGTTAGTAATCGACCGATAACCGTAAAAGCAGATGTTTACAGCTATGGAATGCTTCTTTTCTTATTTTTTTGGTGTTTTGTTTAG 2112 0.3859 MIMNFDRFSGLPDNGTFTIGFTPSDTDNRLFTLGIWFASLPGDRTFVWSPNRNSPTSQEAILELDTTGNLVLVDKKVTIWASNTSNANVESATMSESGNFILHSTNNHPIWQSFSQPSNTLLPNQPLTVSSELTSSKSSSHGGYYALKMLQQPTSLSLALTYNLPESYQTFDENESYANYSYWQGPDISNVTGEVIAVLDQAGSFGIVYGNSSDGAVYVYKNDNDDAGLASAIHQSTPLTVLRRLTLEENGNLRLYRWEDVNGLKQWVSQWAAVSNPCDIGGICGNGVCKLDKTKTNASCTCLPGTSKLGRDGQCYENSSLVGKCTNGKNENKTSSFRISTVQQTNYYFSESSIIANYSESDVSSVSKCGDACLSDCDCVASVYGLNEERPFCWVLRSLSFGGFEDTSSTLFVKVRANSSWTPEGQEGRSNNSSSDGMGSAKEKAVIIPIVLGMIVLIILLTMLLYYSVHRKRTLKREMECSLVLSGAPVNFTYRALQIRTSNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKILPHGEKEFITEVNTIGSMHHMNLVRLCGFCSEGPQRLLVYEFMKNGSLDQWIFPSIRGPDRLLDWQTRFDIAKNTAQGIAYFHEQCRNKIIHCDIKPENILLDENFCPKVSDFGLAKLMAREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLFLFFWCFV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02677 703 FunFam Protein kinase superfamily protein 578 653 - -
Vifa2g02677 703 PIRSF SRK 8 697 IPR024171 GO:0004674
Vifa2g02677 703 Gene3D Transferase(Phosphotransferase) domain 1 578 701 - -
Vifa2g02677 703 Pfam D-mannose binding lectin 45 132 IPR001480 -
Vifa2g02677 703 SMART blect_4 4 117 IPR001480 -
Vifa2g02677 703 Gene3D - 11 116 IPR036426 -
Vifa2g02677 703 ProSiteProfiles Bulb-type lectin domain profile. 1 115 IPR001480 -
Vifa2g02677 703 CDD B_lectin 11 117 IPR001480 -
Vifa2g02677 703 FunFam serine/threonine-protein kinase PBS1-like 470 577 - -
Vifa2g02677 703 SUPERFAMILY alpha-D-mannose-specific plant lectins 45 119 IPR036426 -
Vifa2g02677 703 ProSitePatterns Protein kinases ATP-binding region signature. 508 531 IPR017441 GO:0005524
Vifa2g02677 703 SMART serkin_6 502 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02677 703 Gene3D Phosphorylase Kinase; domain 1 466 577 - -
Vifa2g02677 703 ProSiteProfiles Protein kinase domain profile. 502 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02677 703 Pfam S-locus glycoprotein domain 225 305 IPR000858 GO:0048544
Vifa2g02677 703 SUPERFAMILY Protein kinase-like (PK-like) 482 699 IPR011009 -
Vifa2g02677 703 PANTHER OS07G0415500 PROTEIN 14 695 - -
Vifa2g02677 703 Pfam Protein kinase domain 505 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa2g02677 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02677 Vifa-Chr2 716673179 716675609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02677 448 696 Receptor kinase-like Gene Family AT5G20050 44.361 4.97e-63 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa2g02677 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02677 - - tpra:123904109 1263.83