LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa2g02670	ATGAGTTTCTTGAGGCCATCTGCGATGTACAACCTTGTGATGACTTATCCTTCCTCTCGATGGATGCCTTGTCAGAGTTGGAGTTTCCTTCGATGGCCGGGTCTCGAAGGCTTCTTCAGAGTTCTTGTCGTTTTTCTTCTTTGGTCTACCTTCTCTCAACTCTGCTATATACCTTCTTCTTCTATGTACCCTACCCTACGCGTTGGTGATCGAATTATTGTCGAAAAGGCTTCATATTACATCAGGACTCCTGCTATACGTGATATTGTAACATTTCGAGATCCAACGCAGCATGGAGAGAACACAAATGTTTTTATCAAGAGAATTGTTGCAAAAGAAGGAGATACTGTTGAGGTTCATCATGGAGTACTCTATGTCAATGGTGTTGCTCAAGAGGAGAATTTTGTAATAGAGCCGCCAACATACACAACGAAATTAACTTATGTGCCAACAGGCCATGTTTATGTTATGGGGGATAATCGCAATAATAGCTATGATTCACATGTATGGGGACCACTTCCTATGAAAAACATAGTTGGAAGATATGTCATGTGCTGCCATAGACCAACAAATTGA	576	0.4132	MSFLRPSAMYNLVMTYPSSRWMPCQSWSFLRWPGLEGFFRVLVVFLLWSTFSQLCYIPSSSMYPTLRVGDRIIVEKASYYIRTPAIRDIVTFRDPTQHGENTNVFIKRIVAKEGDTVEVHHGVLYVNGVAQEENFVIEPPTYTTKLTYVPTGHVYVMGDNRNNSYDSHVWGPLPMKNIVGRYVMCCHRPTN	191

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa2g02670	191	NCBIfam	signal peptidase I	39	185	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vifa2g02670	191	SUPERFAMILY	LexA/Signal peptidase	51	184	IPR036286	-
	Vifa2g02670	191	PANTHER	SIGNAL PEPTIDASE I	36	187	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vifa2g02670	191	Pfam	Signal peptidase, peptidase S26	38	184	IPR019533	GO:0004252\|GO:0006465
	Vifa2g02670	191	ProSitePatterns	Signal peptidases I serine active site.	59	66	IPR019756	GO:0004252\|GO:0016020
	Vifa2g02670	191	Gene3D	Umud Fragment, subunit A	59	189	-	-
	Vifa2g02670	191	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	105	117	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vifa2g02670	191	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	149	168	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vifa2g02670	191	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	50	66	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vifa2g02670	191	ProSitePatterns	Signal peptidases I signature 3.	154	167	IPR019758	GO:0004252\|GO:0016020
	Vifa2g02670	191	FunFam	Peptidase/ serine-type peptidase	59	186	-	-
	Vifa2g02670	191	CDD	S26_SPase_I	53	181	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa2g02670	Vifa-Chr2	714362425	714365665	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa2g02670	62	183	MADS-box Gene Family	AT1G29960	33.600	3.63e-09	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa2g02670	K03100		-	gmx:100306121	323.168

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa2g02670	2	714362425	714365665	Vifa2g02670	2	714362425	714365665	ECH