Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02668 ATGTCCAGTCATAACAATAATCGTCGTTCATCTTTTTCTTCCTCAACGACGTCGTCTATGGCCAAACGCCACCCTCCCGTCACGGCCGCTTCCGAGAACATCCCCGGAAAAGCTTTAGCCTCTGCCAAGAAACGTCCTCCTCTCACAAACCTCACCAATCACAATGCTTCTCGTAACTCATCCACTCTGGTAACTAAAGTCGCAAAGACCAAGAAAGAACCTTCAATTTCCGGCAACAAAAAACCTACTTTTTCTAATGTTAAATCAGCTACGGTTGTTTTTCCAAAGGCTATTACTACTAGTAGTACTTCCAGTTCTTTTTCCGAAATTGTTATTCCGTTAGTTCCTACTAGTTTCAATGCTCCGGTTTCGAGTTCAATGGATTTATCGTCCCCCGGTAAATCGGACGGAATGTCGGTTTCGATGGACGAGACAATGTCGTCTTGTGATTCTTTCAAGAGTCCTGATATTGAGTATGTGGATAACAGTGATGCTCCGGCGGTTGATTCTATTGAGAGGAAGACTTACTCTAGTCTTAACATTTCTGATTCTGATTATCCAAAAGGTAATGTTTGTAGTAGAGATATTCTTGTTGAGTTGGAAAAGGGGGAGAAGATTGTTGATATTGATGATGATCATGTGGATCCTCAGCTTTGTGCTTCTTTTGCTTGTGATATCTACAAGCATTTGCGTGCTTCTGAGGCAAAGAAAAGACCAGCCACAAACTTCATGGAGAAGATTCAGAAGGATATAAATCCAAGCATGCGTGCTATATTGATTGACTGGCTAGTGGAGGTGGCTGAAGAGTATAGACTTGTACCAGATACATTGTATTTGACAGTAAACTACATAGACCGGTATCTCTCTGGGAATGCCATGAATAGGCAACAATTACAATTACTTGGAGTTGCTTCTATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTACATAACTGATAACACATACTTCAAGGAAGAGGTTTTGCAGATGGAATCTACTGTCTTAAATTTTTTGAAATTTGAAATGACTGCCCCAACAGTTAAATGCTTCCTGAGAAGATTTGTACGTGCAGCTCAAGGAATTGATGAGGTTCCTTCACTGCAACTAGAGTGCTTGACCAACTACATTGCCGAATTATCCCTGTTGGAGTACAGTATGCTTTGTTATGCTCCATCACTTATAGCAGCTTCTTCAATTTTCCTGGCAAAATTTATGCTATTCCCTTCAACGAGACCATGGAATCCAACATTGCAGCATTACACTCAATACCAGACATCCGATTTGTGTGCTTGTGTAAAAGATCTCCATCGTCTTTGTTGCAACAGCCCTAATTCTAACTTGCCCGCAATTAAGGAGAAATACAATCAGCACAAGTACAAGTATGTGGCCAAGAAGTACTGCCCTTCATCAATACCTCAAGAGTTTTTCCAGAATTGA 1464 0.4098 MSSHNNNRRSSFSSSTTSSMAKRHPPVTAASENIPGKALASAKKRPPLTNLTNHNASRNSSTLVTKVAKTKKEPSISGNKKPTFSNVKSATVVFPKAITTSSTSSSFSEIVIPLVPTSFNAPVSSSMDLSSPGKSDGMSVSMDETMSSCDSFKSPDIEYVDNSDAPAVDSIERKTYSSLNISDSDYPKGNVCSRDILVELEKGEKIVDIDDDHVDPQLCASFACDIYKHLRASEAKKRPATNFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNRQQLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESTVLNFLKFEMTAPTVKCFLRRFVRAAQGIDEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASSIFLAKFMLFPSTRPWNPTLQHYTQYQTSDLCACVKDLHRLCCNSPNSNLPAIKEKYNQHKYKYVAKKYCPSSIPQEFFQN 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02668 487 SUPERFAMILY Cyclin-like 354 479 IPR036915 -
Vifa2g02668 487 FunFam Mitotic cyclin 6 239 339 - -
Vifa2g02668 487 MobiDBLite consensus disorder prediction 46 68 - -
Vifa2g02668 487 SMART cyclin_7 261 345 IPR013763 -
Vifa2g02668 487 SMART cyclin_7 358 446 IPR013763 -
Vifa2g02668 487 PANTHER CYCLINS 164 465 IPR039361 -
Vifa2g02668 487 SMART Cyclin_C_2 354 477 IPR004367 -
Vifa2g02668 487 Gene3D - 239 352 - -
Vifa2g02668 487 MobiDBLite consensus disorder prediction 1 24 - -
Vifa2g02668 487 CDD CYCLIN_AtCycA-like_rpt2 354 468 - -
Vifa2g02668 487 SUPERFAMILY Cyclin-like 215 351 IPR036915 -
Vifa2g02668 487 FunFam Cyclin A1 341 473 - -
Vifa2g02668 487 Pfam Cyclin, N-terminal domain 225 351 IPR006671 -
Vifa2g02668 487 MobiDBLite consensus disorder prediction 124 145 - -
Vifa2g02668 487 MobiDBLite consensus disorder prediction 1 80 - -
Vifa2g02668 487 PIRSF Cyclin_A_B_D_E 2 485 IPR046965 GO:0016538|GO:0044772
Vifa2g02668 487 Gene3D - 225 473 - -
Vifa2g02668 487 Pfam Cyclin, C-terminal domain 354 473 IPR004367 -
Vifa2g02668 487 CDD CYCLIN_AtCycA_like_rpt1 216 350 - -
Vifa2g02668 487 ProSitePatterns Cyclins signature. 256 287 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02668 Vifa-Chr2 714164868 714167363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02668 1 487 Core Cell Cycle Gene Families AT1G44110 60.526 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02668 K06627 - gmx:100789565 708.753