Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02667 ATGTTTACCAGAAGCCGACGCTTCGCTTCATCTTCTTCATCCTCCGACAAGAATTCAAATGATTCAGTTGCAAACAAAAAGATCATCAACGCCGTCAAGACTCGTTTAACGAAGAAACGTCCCGCTCTCGCCGAAGTCACCAATAACACAAATGCCTCTCTCGTCAAAACCTCTTTGGGTGCCGCATCCAAACCTATGGTTCCGTGTGCATCCAAAACAGCAAAGACAAAGAAGGATTCAATTGCGAGTTCAAAGAAAAATGTTATGTCTAAGAACACTTTGCAACCTCCATTGAGAGTAAAATCAAGTGAATTGGTGCCTGCTAAAGAGGCGTGTTTGACAAAAACTAGTCAAACGAAGTCTGAAGTTCAAACCTCCATAGCGCCAAGTAGTGATGGGGCTGTTTGTACTGATTTTAAGAGTGTGGTCTGTGCTCCAAGATGGATGGACATTTCTGCTAGTAACACCTTTAGTGGTTCTGTTTCACTAGATGAGAGCATGTCAACCACTGATTCTTTGACGACTCCGGAATTCAAAGACGATGTTGCGTCGATCAAATCAATTGAAAATAGAACGTGCAACATTCTCAATATTTCAGACTCTTCCAAAATGGCAGGGAGAATAGAAGATATTGACTCCGTACTGAAGTCAAGAGCAAATGAAATTGTTGACATTGACTTCAATATCAAAGACCCACAGTTTTGTGCATCCATTGCCTGTGAAATCTATGAAAACTTGCGTGTATCTGAGAATTCTAAAAGGCCATCTATAGACTTCATGGAGAAGATACAGACAGACATCAATGCCGGCATGCGGGCAATACTTATTGATTGGCTTGTGGAGGTTGCTGAAGAGTCCAGACTTCTACCTGATACACTATTTTTGGCAGTTAACTACCTTGATCGCTATCTTTCAGGCAAAGCAATGAACAGACAGCGGTTACAACTACTTGGTGTTTCCTGCATGATGATTGCCGCTAAATACGAGGAGATCTGTTCCCCCAAGGTGGAGGAGTTTGTTTACACTACTGATAATACATATTCTAAGGAGCAGGTGTTGGAGATGGAGTCCTCTGTGCTGAATTTCTTGAAGTTTGAAATGACAGCTCCTACGACTAGATGTTTTTTGAGACGCTTCATTACGGTTGCCCAACAAACATGTGAGGTTCCATTGATGCAGTTGGAGTATTTGGCCGACTATCTAGCAGAGTTATCACTTATAGAGTATGATATGCTTAAGTACACCCCATCACTAATAGCTGCATCAGCCACTTTCTTGGCTAAATACATACTTCTTCCTATGGAGAAACCTTGGAACTCCATGCTAAGGCATTACACAGGGTACCAAGCATCAGAATTGCATGAATGTGTCAAGGGACTGCATTTGTTGTACTGCAATGGCTATCATAATCCACCTTCCATTACTGCTATCAGAGAGAAATACAGTCAGCATAAGTTCAAGTTTGTGGCGAAGAAGTATTGTCCTCCATCAATACCAGTAGAAGTGTTTCACAACTGA 1518 0.4183 MFTRSRRFASSSSSSDKNSNDSVANKKIINAVKTRLTKKRPALAEVTNNTNASLVKTSLGAASKPMVPCASKTAKTKKDSIASSKKNVMSKNTLQPPLRVKSSELVPAKEACLTKTSQTKSEVQTSIAPSSDGAVCTDFKSVVCAPRWMDISASNTFSGSVSLDESMSTTDSLTTPEFKDDVASIKSIENRTCNILNISDSSKMAGRIEDIDSVLKSRANEIVDIDFNIKDPQFCASIACEIYENLRVSENSKRPSIDFMEKIQTDINAGMRAILIDWLVEVAEESRLLPDTLFLAVNYLDRYLSGKAMNRQRLQLLGVSCMMIAAKYEEICSPKVEEFVYTTDNTYSKEQVLEMESSVLNFLKFEMTAPTTRCFLRRFITVAQQTCEVPLMQLEYLADYLAELSLIEYDMLKYTPSLIAASATFLAKYILLPMEKPWNSMLRHYTGYQASELHECVKGLHLLYCNGYHNPPSITAIREKYSQHKFKFVAKKYCPPSIPVEVFHN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02667 505 SUPERFAMILY Cyclin-like 370 497 IPR036915 -
Vifa2g02667 505 SUPERFAMILY Cyclin-like 230 367 IPR036915 -
Vifa2g02667 505 Gene3D - 241 491 - -
Vifa2g02667 505 SMART Cyclin_C_2 370 495 IPR004367 -
Vifa2g02667 505 ProSitePatterns Cyclins signature. 272 303 IPR006671 -
Vifa2g02667 505 FunFam Cyclin A1 357 491 - -
Vifa2g02667 505 MobiDBLite consensus disorder prediction 1 21 - -
Vifa2g02667 505 PIRSF Cyclin_A_B_D_E 3 504 IPR046965 GO:0016538|GO:0044772
Vifa2g02667 505 Gene3D - 255 368 - -
Vifa2g02667 505 SMART cyclin_7 277 361 IPR013763 -
Vifa2g02667 505 SMART cyclin_7 374 462 IPR013763 -
Vifa2g02667 505 FunFam Mitotic cyclin 6 255 355 - -
Vifa2g02667 505 Pfam Cyclin, N-terminal domain 241 367 IPR006671 -
Vifa2g02667 505 CDD CYCLIN_AtCycA-like_rpt2 370 486 - -
Vifa2g02667 505 Pfam Cyclin, C-terminal domain 370 491 IPR004367 -
Vifa2g02667 505 PANTHER CYCLINS 176 487 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02667 Vifa-Chr2 713062099 713067262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02667 36 505 Core Cell Cycle Gene Families AT1G44110 48.847 4.40e-150 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02667 K06627 - cave:132184255 548.895