Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02662 ATGATGCAGCAACAACAACAAGTGAGTAATGGTAACAGCAATCGCATAGTTGCAGTAAATGTGACACCTTCTGGCACACCATCTCCTAACAATGACTCTCCGAAGCTCGATCAGACACCAGGATGGAAAAAGTTCTTTACATATGTTGGTCCTGGTTTTCTTGTCTCTTTGGCCTACCTTGATCCTGGAAATATGGAAACTGATTTGCAAGCTGGAGCTAACCATGGTTATGAGCTGTTGTGGATCATACTTATTGGACTCATATTTGCACTTATAATTCAATCATTGGCGGCAAATCTTGGAGTATGCACCGGGAAACACCTTTCAGAAGTATGTAAGGCTGAATATCCAATATTTGTGAAGTATTGTTTATGGATATTAGCAGAGCTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGGACAGCATTTGCTCTTAACATACTATTTCACATTCCAGTATGGGGAGGAGTTTTGTTAACTGGATGCAGTACTCTCTTGTTTTTGGGCCTACAAAGATTTGGAGTAAGGAAGTTGGAACTGTTGATATCGATCTTAGTATTTGTAATGGCTGCGTGTTTCTTCGGAGAAATGAGCTATGTAAAACCCCCTGCTTCTGGTGTAGTCGAAGGAATGTTCGTCCCTAAACTCAATGGAAATGGCGCCGTAGCCGATGCTATTGCCCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTCCTCCACTCTGCACTAGTGTTATCTAGAAAAATACCTGGTTCAAAACGCGGCATCAATGATGCATGTAGATACTTCCTAATTGAGAGTGGTTTCGCTTTGTTTGTGGCATTTCTAATCAATGTTGCAATGATTTCTGTATCTGGAACTGTTTGTACTGCCAAAGACATTACTGCTGAAAATGTTGAACGTTGCAGTGATCTTACCCTTAACTCCGCTTCTTTTCTTCTCAAGAATGTATTGGGGCGTTCAAGCTCGATCATTTATGCCATAGCATTGTTAGCTTCTGGACAAAGTTCTGCCATCACTGGCACCTATGCAGGCCAATTTATCATGCAGGGTTTTTTGGACTTAAAGATGAAGAAATGGGTTAGGAACTTGTTGACTAGGATTGTTGCCATAGCACCTAGTCTTGTTGTCTCAATCATTGGTGGTTCTTCTGGAGCCGGACGACTTATCATCATTGCATCGATGATTCTTTCTTTTGAACTTCCATTTGCTTTAATTCCACTCCTTAAATTTAGCAGCAGTAGTACTAAAATGGGACCTCACAAGAATTCAATGATCATTATTGTCATCTCATGGATTCTAGGTTTGGGAATCATTGGTATCAATGTGTACTACCTCATTACTGCTTTTGTGGGTTGGATAATTCATAGCAGTTTACCAAAAGTGGCAAATGTGTTCATTGGAATCATAGTTTTTCCTCTAATGGCACTGTATATTGTCTCGGTTATATATCTAACCTTTAGAAAAGACACTGTTAAAACATTTGTTGAGGTCAAGGATGACCCAGCAATGCAAACTCACATGGAAAAAGGATTTGTAAATGATGGTCAGTTAGCGTTGAGTAATGCTCCTTACAGAGAGGATTTAATTGATATCCCACTGCCAGAGGGACCTAGATTGTGA 1632 0.4044 MMQQQQQVSNGNSNRIVAVNVTPSGTPSPNNDSPKLDQTPGWKKFFTYVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWIILIGLIFALIIQSLAANLGVCTGKHLSEVCKAEYPIFVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWGGVLLTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGEMSYVKPPASGVVEGMFVPKLNGNGAVADAIALLGALIMPHNLFLHSALVLSRKIPGSKRGINDACRYFLIESGFALFVAFLINVAMISVSGTVCTAKDITAENVERCSDLTLNSASFLLKNVLGRSSSIIYAIALLASGQSSAITGTYAGQFIMQGFLDLKMKKWVRNLLTRIVAIAPSLVVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGLGIIGINVYYLITAFVGWIIHSSLPKVANVFIGIIVFPLMALYIVSVIYLTFRKDTVKTFVEVKDDPAMQTHMEKGFVNDGQLALSNAPYREDLIDIPLPEGPRL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02662 543 MobiDBLite consensus disorder prediction 19 38 - -
Vifa2g02662 543 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 28 496 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 Hamap Divalent metal cation transporter MntH [mntH]. 34 453 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 PRINTS Natural resistance-associated macrophage protein signature 177 198 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 PRINTS Natural resistance-associated macrophage protein signature 397 416 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 PRINTS Natural resistance-associated macrophage protein signature 152 171 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 PRINTS Natural resistance-associated macrophage protein signature 227 250 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 PRINTS Natural resistance-associated macrophage protein signature 337 356 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 PRINTS Natural resistance-associated macrophage protein signature 365 382 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 PRINTS Natural resistance-associated macrophage protein signature 124 150 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 44 419 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 Pfam Natural resistance-associated macrophage protein 66 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa2g02662 543 MobiDBLite consensus disorder prediction 19 37 - -
Vifa2g02662 543 NCBIfam Nramp family divalent metal transporter 50 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02662 Vifa-Chr2 711741815 711744731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02662 4 517 Inorganic Solute Cotransporters AT1G80830 59.615 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02662 K21398 - gmx:100787785 857.825