Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02657 ATGGCGGATAAGGTGGACACGGTTGCAAGATTAGCACAGTGGAAAATCGACAACTTTGGACCTTCTTCCTACAAAAAATCTGATCCTTTCAAGCTCGGAATCTGGAACTGGCACTTTACAATAGTAAGGAATCGATTCTTCTCCATTCATCTTTTTCCAGAACCTTCTCGTCTTTCTAAGGAACATCCACCCGTTGCTAGATTCATTCTTCGTGTCTCCGTTGCTGGTTCATCCCGCAACTTTATTATTTCTCCAGTTTATGAAAGGCTGCTTAGGACACAGGATGACTTTGTCTGGTCTGTTGATACTGCATTCACGGGTCGCTTCATCATCGACGTTGAGTTTCTTGACCTGAAGATATGCCATATGAGTGGTGGAGAACCTAGTTCTATATGGTCATCTGATGGAAATTCGCCATGCAACGAAGCTCAAAGAAGTACTCTCCATTGCCTCTCTCGCATGCTTGATGAGGCTATAAATGCTGACCTAACCATTATAACTTCCGATGGTACGTTAAGAGCTCACAAGGCAGTTTTGTCCGCGAGTTCCCCAGTGTTTCAAAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCATCAACAATTCATATAGAAGACATCTCACTTGAATCATGCACTGCTCTTCTAAGTTACTTGTATGGAGCAATCAAACACGAAGATTTCCGGAAACACTGTCTTGCATTACTCGGTGCAGCTAATAAGTACGACATCGGTGATCTGAAAGATTTATGTGAGGAAAGCCTTCTTGAAGATATTAACTCAGATAGGGAGCTAGTGATGGAAATGTTTCATGTGATGCTTACAGTTTCTAACCCAAAATAG 843 0.4211 MADKVDTVARLAQWKIDNFGPSSYKKSDPFKLGIWNWHFTIVRNRFFSIHLFPEPSRLSKEHPPVARFILRVSVAGSSRNFIISPVYERLLRTQDDFVWSVDTAFTGRFIIDVEFLDLKICHMSGGEPSSIWSSDGNSPCNEAQRSTLHCLSRMLDEAINADLTIITSDGTLRAHKAVLSASSPVFQSMFHHNLKEKESSTIHIEDISLESCTALLSYLYGAIKHEDFRKHCLALLGAANKYDIGDLKDLCEESLLEDINSDRELVMEMFHVMLTVSNPK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02657 280 Pfam BTB/POZ domain 154 257 IPR000210 GO:0005515
Vifa2g02657 280 PANTHER OS08G0495500 PROTEIN-RELATED 1 263 IPR044714 -
Vifa2g02657 280 SUPERFAMILY POZ domain 142 257 IPR011333 -
Vifa2g02657 280 CDD BTB_POZ_ZBTB_KLHL-like 161 242 - -
Vifa2g02657 280 ProSiteProfiles BTB domain profile. 161 220 IPR000210 GO:0005515
Vifa2g02657 280 Gene3D Potassium Channel Kv1.1; Chain A 131 277 IPR011333 -
Vifa2g02657 280 SMART BTB_4 161 259 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02657 Vifa-Chr2 710683825 710685944 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa2g02657 BTB 1.1e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02657 K10523 - gmx:100787262 417.542