Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02638 ATGGCGGAGGGAACCCATCCTATGGACATCGACGGCGCCGACCAAACCAACTCTTTCTCCGCAAACCCCGATAAGGGCAAAAATGTCATTCTCGCCGGCAACCCTTCACACGGCGGCAAAGCCTCTCTCTGGGTCGAAAAATATCGTCCTCAGTCCCTCGACGACGTTGCTGCTCACCGTGACATTGTCGACACCATTGATAAATTGACGACTGAGAACAGATTGCCCCATCTTCTGTTGTATGGTCCTCCCGGAACCGGCAAAACATCGACTATTCTCGCTGTTGCCCGGAAACTATACGGTCCTCAATACCATAATATGATTTTGGAGCTCAATGCTTCTGATGATAGAGGAATTGATGTTGTTAGACAGCAGATTCAGGATTTTGCTAGCACTCAGAGCTTATCATTTGGCGTCAAGCCTTCTGTGAAACTTGTCTTGTTAGATGAAGCGGATGCCATGACTAAGGACGCTCAATTTGCATTACGTAGAGTTATTGAGAAATATACAAAGAGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATCCCAGCATTGCAGTCGAGATGCACTCGGTTTCGGTTTGCTCCTCTTGATGCTGTACATGTCACTGAAAGACTGAAACATGTTATTAATGCTGAAAGGCTTGATGTTCAAGACAGTGGCTTGTCTGCTCTTGTTCGACTTAGTAATGGTGATATGAGAAAGGCGTTGAATATTCTTCAGTCAACACACATGGCCTCTCAGCAGATAACAGAAGAAGCTGTTTACCTTTGCACTGGAAATCCGTTGCCCAAAGACATAGAGCAAATATCTCACTGGCTTCTAAATGAACAATATTCAGAGAGCTTTAAAAGAATTAACGATATGAAAACAAGGAAAGGACTGGCCCTTGTTGATATTGTAAGAGAAGTGACAATGTTTGTCTTTAAGATTAAGATGCCTCCAGCTGTTCGAGTGCAGTTGGTGAATGATTTGGCTGACATAGAGTACAGGTTAAGTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCAGTTGTTGCTTCGTTTACACGTGCTAGAACTGCACTGGTTGCAACTGCTGCTGCATAA 1101 0.4405 MAEGTHPMDIDGADQTNSFSANPDKGKNVILAGNPSHGGKASLWVEKYRPQSLDDVAAHRDIVDTIDKLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGPQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISHWLLNEQYSESFKRINDMKTRKGLALVDIVREVTMFVFKIKMPPAVRVQLVNDLADIEYRLSFGCNDKLQLGSVVASFTRARTALVATAAA 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02638 366 Gene3D - 266 364 - -
Vifa2g02638 366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 259 IPR027417 -
Vifa2g02638 366 FunFam Replication factor C subunit 5 36 201 - -
Vifa2g02638 366 FunFam Replication factor C subunit 5 266 363 - -
Vifa2g02638 366 Pfam Replication factor C C-terminal domain 266 352 IPR013748 -
Vifa2g02638 366 SMART AAA_5 74 204 IPR003593 GO:0016887
Vifa2g02638 366 Pfam ATPase family associated with various cellular activities (AAA) 78 198 IPR003959 GO:0005524|GO:0016887
Vifa2g02638 366 MobiDBLite consensus disorder prediction 1 33 - -
Vifa2g02638 366 CDD AAA 62 200 - -
Vifa2g02638 366 CDD HLD_clamp_RFC 201 263 - -
Vifa2g02638 366 Gene3D - 204 265 - -
Vifa2g02638 366 FunFam Replication factor C subunit 5 203 265 - -
Vifa2g02638 366 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 44 347 - -
Vifa2g02638 366 Gene3D - 37 200 IPR027417 -
Vifa2g02638 366 SUPERFAMILY post-AAA+ oligomerization domain-like 266 356 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02638 Vifa-Chr2 705255079 705261392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02638 1 364 Core DNA Replication Machinery Family AT1G77470 76.882 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02638 K10756 - gmx:100782652 618.231