Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa2g02636 | ATGGAACGCGATGAGGGAAAACAATCTTCTCAAAAGAATCCATACACAGAACTTGGGGAAGTTAGCTCTGACTTTCTTCTAGCAATTGGCTTGCAAGAACAAGAGTTAGAGAGACCAACAGTCACAAATCTAGCAACCATTGAAAGTGAAAGTGAAGAAGAAGAAGATTTATCAAGTGACTCTTCTTTTATTAATGATGATGAAATTGGTGATGCTGATTTTACTTTGAGCCAAGAGTTCGAAACCGATCTTCGGTTTCTTGAAGACGAAGAAAGCAATATCGATGACGACGAGGACGAGGACTACGACGAGGATGAAATGGATATAGAAGAAGATGAAGTTGATCCAGATGAGTTATCTTATGAAGAGTTGCTAGAGTTAGGAGAGTTTATAGGAGAAGAAGCAAGAGGATTATCAAGAAAGGAAATTTCTACTTGCTTAAATCCTTATACTTGCAAAACTTCTGAAAGCAAAAGTGGAATAGATCTTTGTGTGATTTGTCAGATTGAGTATGAAGAAGGTGAACCTTTGGTTACACTTCATTGTGATCATCCTTATCATAAAGATTGCATAAGCAAGTGGCTTCAAATTAAGAAGGTTTGTCCAATTTGTAGCAATGAAGCATCAACTCCAAACAAGGCTAAGAACACTTGA | 654 | 0.3731 | MERDEGKQSSQKNPYTELGEVSSDFLLAIGLQEQELERPTVTNLATIESESEEEEDLSSDSSFINDDEIGDADFTLSQEFETDLRFLEDEESNIDDDEDEDYDEDEMDIEEDEVDPDELSYEELLELGEFIGEEARGLSRKEISTCLNPYTCKTSESKSGIDLCVICQIEYEEGEPLVTLHCDHPYHKDCISKWLQIKKVCPICSNEASTPNKAKNT | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa2g02636 | 217 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Vifa2g02636 | 217 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 46 | 208 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
| Vifa2g02636 | 217 | MobiDBLite | consensus disorder prediction | 86 | 110 | - | - | |
| Vifa2g02636 | 217 | SUPERFAMILY | RING/U-box | 163 | 209 | - | - | |
| Vifa2g02636 | 217 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 214 | IPR013083 | - | |
| Vifa2g02636 | 217 | SMART | ring_2 | 164 | 204 | IPR001841 | - | |
| Vifa2g02636 | 217 | ProSiteProfiles | Zinc finger RING-type profile. | 164 | 205 | IPR001841 | - | |
| Vifa2g02636 | 217 | Pfam | Ring finger domain | 163 | 204 | IPR001841 | - | |
| Vifa2g02636 | 217 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - | |
| Vifa2g02636 | 217 | MobiDBLite | consensus disorder prediction | 38 | 68 | - | - | |
| Vifa2g02636 | 217 | FunFam | E3 ubiquitin ligase BIG BROTHER-related | 130 | 211 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vifa2g02636 | Vifa-Chr2 | 704684375 | 704685028 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vifa2g02636 | 111 | 208 | C3H Transcription Factor Family | AT3G63530 | 47.525 | 1.01e-26 | 101 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa2g02636 | K19045 | - | gmx:100526881 | 239.58 |